View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5277-Insertion-5 (Length: 425)
Name: NF5277-Insertion-5
Description: NF5277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5277-Insertion-5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Original strand, 42070796 - 42071214
Alignment:
| Q |
7 |
aaaaaagatcaggccgggaagtataagagataagaattaaattgaggaaactatagaaattgaaggaggataaatgtatggtttcatatggttaagaacc |
106 |
Q |
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| T |
42070796 |
aaaaaagatcaggccaggaagtataagagataagaattaaattgaggaaactatagaaattgaaggaggataaatgtatggtttcatatggttaagaacc |
42070895 |
T |
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| Q |
107 |
ttttccacaatggattcaacaatatcttctgtaactgtaacttctgattcagtcaaagtagccaagaccatctccttcaactttaatgtgccattatgta |
206 |
Q |
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| T |
42070896 |
ttttccacaatggattcaacaatatcttctgtaactgtaacttctgattcagtcaaagtagccaagaccatctccttcaactttaatgtgccattatgta |
42070995 |
T |
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| Q |
207 |
caaaaaaggttcataagacactcaagaagttagaatgaaatgcataaatgtaactatagtctataactactaaagttacatgagaaggagcattcactca |
306 |
Q |
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| T |
42070996 |
caaaaaaggttcataagacactcaagaagttagaatgaaatgcataaatgtaactatagtctataactactaaagttacatgagaaggagcattcactca |
42071095 |
T |
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| Q |
307 |
aaaaacaactacttcctctgtccttaaatataagaccatttagagattttaatgtcactttttataggagcattttcaactgcattatttatttctttac |
406 |
Q |
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| T |
42071096 |
aaaaacaactacttcctctgtccttaaatataagaccatttagagattttaatgtcactttttataggagcattttcaactgcattatttatttctttac |
42071195 |
T |
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| Q |
407 |
taacatatccttaattatg |
425 |
Q |
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| T |
42071196 |
taacatatccttaattatg |
42071214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 4681620 - 4681665
Alignment:
| Q |
379 |
ttttcaactgcattatttatttctttactaacatatccttaattat |
424 |
Q |
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| T |
4681620 |
ttttcaactgcattaattatttctttaccaacatacccttaattat |
4681665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 635228 - 635273
Alignment:
| Q |
378 |
attttcaactgcattatttatttctttactaacatatccttaatta |
423 |
Q |
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| T |
635228 |
attttcaactgcattatttatttctttactaacatagccctaatta |
635273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 424
Target Start/End: Original strand, 13138798 - 13138844
Alignment:
| Q |
378 |
attttcaactgcattatttatttctttactaacatatccttaattat |
424 |
Q |
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| T |
13138798 |
attttcaactacattaattatttctttactaacatacccttatttat |
13138844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 39315241 - 39315196
Alignment:
| Q |
378 |
attttcaactgcattatttatttctttactaacatatccttaatta |
423 |
Q |
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| T |
39315241 |
attttcaactgcattaactatttctttactaacataaccctaatta |
39315196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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