View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5277-Insertion-6 (Length: 417)
Name: NF5277-Insertion-6
Description: NF5277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5277-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 47653401 - 47653775
Alignment:
| Q |
8 |
tcttgatggttctagataattggcgtattattgctctcgatgtactctccagattctccaacaagtgatattatagctctagtttgacttgacggaggag |
107 |
Q |
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| T |
47653401 |
tcttggtggtcctagataattggcatactattgctctcgatgtactctccagattctccaacaaatgatattatagctctagtttgacttgacggaggag |
47653500 |
T |
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| Q |
108 |
caatagtaaccacgatgtttgattgttgtataagaagtatttttaacgatgtagtcacgaggcatgttttgttggttgtaacgacagtgcaagtataata |
207 |
Q |
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| T |
47653501 |
caatagtaaccacgatgtttgattgttgtataagaagtatttttaacgatgtagtcacgaggcatgttttgttggttgtaacgacagtgcaagtataata |
47653600 |
T |
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| Q |
208 |
tatgaaaggctgataattgaggggaagattgttgagttcatatgtgagtgattagtctcacattgaccgtaaatgaattgaatgtttgatatataagaga |
307 |
Q |
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| T |
47653601 |
tatgaaaggctgataattgaggggaagattgttgagttcatatgtgagtgattagtctcacattgaccgtaaatgaattgaatgtttgatatataagaga |
47653700 |
T |
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| Q |
308 |
ggtgacctatatgcgaatgtcttgaagttttggataaagatgtatagatatcttagttgtcatggcattagtttg |
382 |
Q |
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| T |
47653701 |
ggtgacctatatgcgaatgtcttgaagttttggataaagatgtatagatatcatagtggtcatggcattagtttg |
47653775 |
T |
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