View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5277_high_1 (Length: 337)
Name: NF5277_high_1
Description: NF5277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5277_high_1 |
 | |
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| [»] scaffold0187 (1 HSPs) |
| | |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 13220412 - 13220092
Alignment:
| Q |
1 |
agcccaaacaagatgtccaaataagaacatccacgcccagactgataaactattcataccaaaagggttatatccattgataagttgtgaagaatttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13220412 |
agcccaaacaagatgtccaaataagaacatccacgcccagactgataaactattcataccaaaagggttatatccattgataagttgtgaagaatttaac |
13220313 |
T |
|
| Q |
101 |
catagataatctcttaaccatcccatcaaataggtagaagattcattaaatagtgaaacattaccctgccataatgtaatgtgcttccaatgccaataaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13220312 |
catagataatctcttaaccatcccatcaaataggtagaagattcattaaattgtgaaacattaccctgccataatgtaatgtgcttccaatgccaataaa |
13220213 |
T |
|
| Q |
201 |
aagtaacccatccaatggtatttaacaaccagaaaactgccaaataaaatgcgtcccaagccgaaatatcacaagtaccaccacgtcccggaccatcgca |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13220212 |
aagtaacccatccaatggtatttaacatccagaaaactgccaaataaaatgcgtcccaagccgaaatatcacaagtaccacctcgtcccggaccatcgca |
13220113 |
T |
|
| Q |
301 |
aggaaaactataaccaaaatc |
321 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
13220112 |
aggaaaactataaccaaaatc |
13220092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 21659973 - 21660074
Alignment:
| Q |
186 |
tccaatgccaataaaaagtaacccatccaatggtatttaacaaccagaaaactgccaaataaaatgcgtcccaagccgaaatatcacaagtaccaccacg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21659973 |
tccaatgccaataaaaagtaacccatccaatggtatttaacatccagaaaactgccaaataaaatgcgtcccaagccgaaatatcacaagtaccacctcg |
21660072 |
T |
|
| Q |
286 |
tc |
287 |
Q |
| |
|
|| |
|
|
| T |
21660073 |
tc |
21660074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 43 - 321
Target Start/End: Complemental strand, 30792 - 30514
Alignment:
| Q |
43 |
tgataaactattcataccaaaagggttatatccattgataagttgtgaagaatttaaccatagataatctcttaaccatcccatcaaataggtagaagat |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30792 |
tgataaactattcataccaaaagggttatatccattgataagttgtgaagaatttaaccatagataatctcttaaccatcccatcaaataggtagaagat |
30693 |
T |
|
| Q |
143 |
tcattaaatagtgaaacattaccctgccataatgtaatgtgcttccaatgccaataaaaagtaacccatccaatggtatttaacaaccagaaaactgcca |
242 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
30692 |
tcattaaattgtgaaacattaccctgccataatgtaatgtgcttccaatgccaataaaaagtaacccatccaatggtatttaacatccagaaaattgcca |
30593 |
T |
|
| Q |
243 |
aataaaatgcgtcccaagccgaaatatcacaagtaccaccacgtcccggaccatcgcaaggaaaactataaccaaaatc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
30592 |
aataaaatgcgtcccaagccgaaatatcacaagtaccacctcgtctcggaccatcgcaaggaaaactataaccaaaatc |
30514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 43 - 321
Target Start/End: Original strand, 37908285 - 37908563
Alignment:
| Q |
43 |
tgataaactattcataccaaaagggttatatccattgataagttgtgaagaatttaaccatagataatctcttaaccatcccatcaaataggtagaagat |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37908285 |
tgataaactattcataccaaaagggttatatccattgataagttgtgaagaatttaaccatagataatctcttaaccatcccatcaaataggtagaagat |
37908384 |
T |
|
| Q |
143 |
tcattaaatagtgaaacattaccctgccataatgtaatgtgcttccaatgccaataaaaagtaacccatccaatggtatttaacaaccagaaaactgcca |
242 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
37908385 |
tcattaaattgtgaaacattaccctgccataatgtaatgtgcttccaatgccaataaaaagtaacccatccaatggtatttaacatccagaaaattgcca |
37908484 |
T |
|
| Q |
243 |
aataaaatgcgtcccaagccgaaatatcacaagtaccaccacgtcccggaccatcgcaaggaaaactataaccaaaatc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
37908485 |
aataaaatgcgtcccaagccgaaatatcacaagtaccacctcgtctcggaccatcgcaaggaaaactataaccaaaatc |
37908563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 43025723 - 43025981
Alignment:
| Q |
1 |
agcccaaacaagatgtccaaataagaacatccacgcccagactgataaactattcataccaaaagggttatatccattgataagttgtgaagaatttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025723 |
agcccaaacaagatgtccaaataagaacatccacgcccagactgataaactattcataccaaaagggttatatccattgataagttgtgaagaatttaac |
43025822 |
T |
|
| Q |
101 |
catagataatctcttaaccatcccatcaaataggtagaagattcattaaatagtgaaacattaccctgccataatgtaatgtgcttccaatgccaataaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43025823 |
catagataatctcttaaccatcccatcaaataggtagaagattcattaaattgtgaaacattaccctgccataatgtaatgtgcttccaatgccaataaa |
43025922 |
T |
|
| Q |
201 |
aagtaacccatccaatggtatttaacaaccagaaaactgccaaataaaatgcgtcccaa |
259 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43025923 |
aagtaactcatccaatggtatttaacatccagaaaactgccaaataaaatgcgtcccaa |
43025981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 237297 - 237617
Alignment:
| Q |
1 |
agcccaaacaagatgtccaaataagaacatccacgcccagactgataaactattcataccaaaagggttatatccattgataagttgtgaagaatttaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
237297 |
agcccaaacaagatgtccaaataagaacatccaagcccataccgataaactattcatcccaaaaggattatatccattgataagttgtgaagagtttaac |
237396 |
T |
|
| Q |
101 |
catagataatctcttaaccatcccatcaaataggtagaagattcattaaatagtgaaacattaccctgccataatgtaatgtgcttccaatgccaataaa |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||||||| ||||||| || |||||||||||||| || || |||||||||||||||| |
|
|
| T |
237397 |
cataggtaatctcttaaccatcccatcaaataagtggaggattcattaaattgtgaaacgttgccctgccataatgtgatatgtttccaatgccaataaa |
237496 |
T |
|
| Q |
201 |
aagtaacccatccaatggtatttaacaaccagaaaactgccaaataaaatgcgtcccaagccgaaatatcacaagtaccaccacgtcccggaccatcgca |
300 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || || || || || || || |
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|
| T |
237497 |
aagtaacccacccaatggtatttaacatccagaaaactgccaaataaaatgcgtcccaagcagaaatatcacaagtaccgccgcgccctgggccgtcaca |
237596 |
T |
|
| Q |
301 |
aggaaaactataaccaaaatc |
321 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
237597 |
aggaaaactatacccaaaatc |
237617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 7243649 - 7243568
Alignment:
| Q |
232 |
gaaaactgccaaataaaatgcgtcccaagccgaaatatcacaagtaccaccacgtcccggaccatcgcaaggaaaactataa |
313 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||| |
|
|
| T |
7243649 |
gaaaactaccaaataaaatgcatcccaagccgaaatatcacaagtaccaccttgtctcggaccatcgcaagaaaaattataa |
7243568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 321
Target Start/End: Original strand, 35070099 - 35070201
Alignment:
| Q |
218 |
gtatttaacaaccagaaaactgccaaataaaatgcgtcccaagccgaaatatcacaagtaccaccacgtcccggaccatcgcaaggaaaactataaccaa |
317 |
Q |
| |
|
|||||||||| ||| || ||||||||||||| || |||||||||||||||||||||||||||||| | | || || ||||||| ||||||||||| ||| |
|
|
| T |
35070099 |
gtatttaacatccaaaagactgccaaataaattgtgtcccaagccgaaatatcacaagtaccacctcat-ccaaactatcgcaaagaaaactataatcaa |
35070197 |
T |
|
| Q |
318 |
aatc |
321 |
Q |
| |
|
|||| |
|
|
| T |
35070198 |
aatc |
35070201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 321
Target Start/End: Original strand, 35096145 - 35096247
Alignment:
| Q |
218 |
gtatttaacaaccagaaaactgccaaataaaatgcgtcccaagccgaaatatcacaagtaccaccacgtcccggaccatcgcaaggaaaactataaccaa |
317 |
Q |
| |
|
|||||||||| ||| || ||||||||||||| || |||||||||||||||||||||||||||||| | | || || ||| ||| ||||||||||||||| |
|
|
| T |
35096145 |
gtatttaacatccaaaagactgccaaataaattgtgtcccaagccgaaatatcacaagtaccacctcat-ccaaactatctcaaagaaaactataaccaa |
35096243 |
T |
|
| Q |
318 |
aatc |
321 |
Q |
| |
|
|||| |
|
|
| T |
35096244 |
aatc |
35096247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 48364334 - 48364288
Alignment:
| Q |
234 |
aaactgccaaataaaatgcgtcccaagccgaaatatcacaagtacca |
280 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||| |||||||| |
|
|
| T |
48364334 |
aaactgccaaataaaatgcatcccaaaccgaaatatcataagtacca |
48364288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 321
Target Start/End: Complemental strand, 18045328 - 18045300
Alignment:
| Q |
293 |
ccatcgcaaggaaaactataaccaaaatc |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18045328 |
ccatcgcaaggaaaactataaccaaaatc |
18045300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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