View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5277_high_5 (Length: 226)

Name: NF5277_high_5
Description: NF5277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5277_high_5
NF5277_high_5
[»] scaffold0879 (5 HSPs)
scaffold0879 (78-212)||(4465-4599)
scaffold0879 (78-204)||(4665-4791)
scaffold0879 (78-201)||(4572-4695)
scaffold0879 (78-189)||(4536-4647)
scaffold0879 (149-204)||(4809-4864)
[»] chr4 (40 HSPs)
chr4 (78-212)||(24421175-24421309)
chr4 (78-212)||(24470414-24470548)
chr4 (78-212)||(24470606-24470740)
chr4 (78-204)||(24420839-24420965)
chr4 (78-204)||(24420983-24421109)
chr4 (78-212)||(24420599-24420733)
chr4 (154-207)||(24477388-24477441)
chr4 (78-181)||(24421367-24421470)
chr4 (78-181)||(24470253-24470356)
chr4 (89-207)||(24420466-24420584)
chr4 (78-192)||(24470338-24470452)
chr4 (89-207)||(24471042-24471160)
chr4 (79-189)||(24477457-24477567)
chr4 (83-212)||(24421324-24421453)
chr4 (83-212)||(24470270-24470399)
chr4 (80-212)||(24420553-24420685)
chr4 (80-204)||(24477602-24477726)
chr4 (78-201)||(24470521-24470644)
chr4 (78-192)||(24420743-24420857)
chr4 (78-192)||(24421271-24421385)
chr4 (78-212)||(24470893-24471027)
chr4 (119-192)||(24481484-24481556)
chr4 (80-207)||(24470946-24471073)
chr4 (78-204)||(24470758-24470883)
chr4 (78-212)||(24477408-24477542)
chr4 (79-200)||(24406495-24406616)
chr4 (86-207)||(24470707-24470828)
chr4 (78-143)||(24477285-24477350)
chr4 (78-201)||(24421079-24421202)
chr4 (79-173)||(24406393-24406487)
chr4 (131-189)||(24477194-24477252)
chr4 (83-212)||(24477557-24477686)
chr4 (89-189)||(24470821-24470920)
chr4 (146-201)||(24420331-24420386)
chr4 (78-201)||(24420503-24420626)
chr4 (89-162)||(24420706-24420779)
chr4 (86-207)||(24420895-24421016)
chr4 (78-195)||(24477504-24477621)
chr4 (78-186)||(24421127-24421235)
chr4 (85-201)||(24471000-24471116)
[»] chr2 (11 HSPs)
chr2 (78-210)||(41899912-41900044)
chr2 (80-182)||(41900346-41900448)
chr2 (78-186)||(41899960-41900068)
chr2 (158-210)||(41900280-41900332)
chr2 (80-180)||(41900538-41900638)
chr2 (88-201)||(41899826-41899939)
chr2 (78-210)||(41900008-41900140)
chr2 (80-182)||(41900154-41900256)
chr2 (78-204)||(41900296-41900422)
chr2 (80-156)||(41900106-41900182)
chr2 (158-210)||(41900472-41900524)
[»] chr1 (3 HSPs)
chr1 (78-201)||(11902065-11902188)
chr1 (78-138)||(11879484-11879544)
chr1 (88-212)||(52821010-52821134)
[»] scaffold1918 (1 HSPs)
scaffold1918 (87-180)||(425-518)


Alignment Details
Target: scaffold0879 (Bit Score: 119; Significance: 6e-61; HSPs: 5)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 4599 - 4465
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  4599 acttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgacttgtaaacatatggtgggggaggtgagggtgatggtggaggaggagactt 4500  T
Q  178 gtagacatatggaggcggtggtgatggagagggtg 212  Q
    ||||||||||||||| |||||||||||||||||||    
T  4499 gtagacatatggaggtggtggtgatggagagggtg 4465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 204
Target Start/End: Complemental strand, 4791 - 4665
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    |||||||||||||||| ||||| || || || || || ||||||||||| || || ||||| |||| |||||| ||||||||||||||||||||||||||    
T  4791 acttgtagacatatggtggagggggggatggagatgggggtggtggtgatttatatacatatggtgggggaggggagggtgatggtggaggaggagactt 4692  T
Q  178 gtagacatatggaggcggtggtgatgg 204  Q
    ||| | |||||| || || ||||||||    
T  4691 gtatatatatggtggagggggtgatgg 4665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 201
Target Start/End: Complemental strand, 4695 - 4572
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||| | |||||| ||||| ||||| ||||| || |||||||| |||||||||| ||| || |  || || || || |||||||| || || |||||    
T  4695 acttgtatatatatggtggagggggtgatggggatggtggtggtggggacttgtaaatatatggaggtggtggagatggggatggtggtggtggtgactt 4596  T
Q  178 gtagacatatggaggcggtggtga 201  Q
    ||||||||||||||| || |||||    
T  4595 gtagacatatggaggaggaggtga 4572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 4647 - 4536
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||| | ||||||||| || || || ||||| || ||||||||||||||||| ||||| || |  |||||||| || ||||| || || || |||||    
T  4647 acttgtaaatatatggaggtggtggagatggggatggtggtggtggtgacttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgactt 4548  T
Q  178 gtagacatatgg 189  Q
    ||| ||||||||    
T  4547 gtaaacatatgg 4536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 4864 - 4809
Alignment:
Q  149 ggtgagggtgatggtggaggaggagacttgtagacatatggaggcggtggtgatgg 204  Q
    ||||| ||||||||||| || ||||| ||||||||||||||||| ||||| |||||    
T  4864 ggtgaaggtgatggtgggggtggagatttgtagacatatggaggtggtggagatgg 4809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 24421175 - 24421309
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  24421175 acttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgacttgtaaacataaggtgggggaggtgagggtgatggtggaggaggagactt 24421274  T
Q  178 gtagacatatggaggcggtggtgatggagagggtg 212  Q
    ||||||||||||||| |||||||||||||||||||    
T  24421275 gtagacatatggaggtggtggtgatggagagggtg 24421309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 24470548 - 24470414
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  24470548 acttgtagacatatggaggaggaggtgaaggggaaggaggtggtggtgacttgtaaacatagggcgggggaggtgagggtgttggtggaggaggagactt 24470449  T
Q  178 gtagacatatggaggcggtggtgatggagagggtg 212  Q
    ||||||||||||||| |||||||||||||||||||    
T  24470448 gtagacatatggaggtggtggtgatggagagggtg 24470414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 24470740 - 24470606
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||| |||||||| |||||| || |||||||||||||||||||||||    
T  24470740 acttgtagacatatggaggaggaggtgaaggagatggaggtggtggcgacttataaatatagggtgggggaggagaaggtgatggtggaggaggagactt 24470641  T
Q  178 gtagacatatggaggcggtggtgatggagagggtg 212  Q
    ||||||||||||||| |||||||||||||||||||    
T  24470640 gtagacatatggaggtggtggtgatggagagggtg 24470606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 24420839 - 24420965
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || ||||| ||||  || ||||| ||||||||||| || ||||| ||    
T  24420839 acttgtaaacatatggaggaggaggggaaggggaaggaggtggtggtgacttatatacatatggtggagggggtgaaggtgatggtgggggtggagattt 24420938  T
Q  178 gtagacatatggaggcggtggtgatgg 204  Q
    ||||||||||||||| ||||| |||||    
T  24420939 gtagacatatggaggtggtggagatgg 24420965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 24420983 - 24421109
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    |||||||||||||||| ||||| || || || || || ||||||||||| || || ||||| |||| |||||| ||||||||||||||||||||||||||    
T  24420983 acttgtagacatatggtggagggggggatggagatgggggtggtggtgatttatatacatatggtgggggaggggagggtgatggtggaggaggagactt 24421082  T
Q  178 gtagacatatggaggcggtggtgatgg 204  Q
    ||| | |||||| || || ||||||||    
T  24421083 gtatatatatggtggagggggtgatgg 24421109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 24420599 - 24420733
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    |||| |||||||||||||| || ||||||||||| || ||||||||||||||||| | ||| || |  || ||||| || ||||||||||||||||| ||    
T  24420599 acttatagacatatggaggtggtggtgaaggggatggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagattt 24420698  T
Q  178 gtagacatatggaggcggtggtgatggagagggtg 212  Q
     || || |||||||| ||||| |||||||| ||||    
T  24420699 ataaacgtatggaggtggtggggatggagacggtg 24420733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 24477388 - 24477441
Alignment:
Q  154 gggtgatggtggaggaggagacttgtagacatatggaggcggtggtgatggaga 207  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24477388 gggtgatggtggaggaggagacttgtagacatatggaggtggtggtgatggaga 24477441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 181
Target Start/End: Original strand, 24421367 - 24421470
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||| || |  || |||||||| ||||||||||| ||||| ||    
T  24421367 acttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggagattt 24421466  T
Q  178 gtag 181  Q
    ||||    
T  24421467 gtag 24421470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 24470356 - 24470253
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||| || |  || |||||||| ||||||||||| ||||| ||    
T  24470356 acttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggagattt 24470257  T
Q  178 gtag 181  Q
    ||||    
T  24470256 gtag 24470253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 24420466 - 24420584
Alignment:
Q  89 tatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacatatg 188  Q
    ||||||||||| |||||||  || |||||||| |||||||| || ||||||||||  || ||||| || |||||||| |||||||| ||||| |||||||    
T  24420466 tatggaggaggtggtgaagctgaaggaggtggaggtgacttatagacatagggtggagggggtgaaggagatggtgggggaggagatttgtaaacatatg 24420565  T
Q  189 gaggcggtggtgatggaga 207  Q
    |||| || ||||| |||||    
T  24420566 gaggagggggtgaaggaga 24420584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 24470452 - 24470338
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||||||||||||||| || ||||| || || || ||||||||   ||| || ||||| |||| ||||||||| |||||||| ||||| || |||||    
T  24470452 acttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggtgatggaggaggtggtgactt 24470353  T
Q  178 gtagacatatggagg 192  Q
    |||||||||||||||    
T  24470352 gtagacatatggagg 24470338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 24471160 - 24471042
Alignment:
Q  89 tatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacatatg 188  Q
    ||||||||||| |||||||  || |||||||| |||||||| |  ||||||||||  |||||||| || |||||||| |||||||| ||||| |||||||    
T  24471160 tatggaggaggtggtgaagctgaaggaggtggaggtgacttatggacatagggtggaggaggtgaaggagatggtgggggaggagatttgtaaacatatg 24471061  T
Q  189 gaggcggtggtgatggaga 207  Q
    |||| || ||||| |||||    
T  24471060 gaggagggggtgaaggaga 24471042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 24477457 - 24477567
Alignment:
Q  79 cttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttg 178  Q
    ||||||||||||||| || ||||||||||| || ||||| |||||||||||||| ||||| || |  ||||||||||| |||||||| || |||  |||     
T  24477457 cttgtagacatatggtgggggaggtgaaggagatggaggaggtggtgacttgtagacatatggaggtggaggtgagggagatggtggtggtggactctta 24477556  T
Q  179 tagacatatgg 189  Q
    |||||||||||    
T  24477557 tagacatatgg 24477567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 24421324 - 24421453
Alignment:
Q  83 tagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtaga 182  Q
    ||||||||||| || ||||||||||| || ||||| |||||||||||||| ||||| || |  ||||| ||||| ||||| || || || |||||||| |    
T  24421324 tagacatatggtgggggaggtgaaggagatggaggaggtggtgacttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgtaca 24421423  T
Q  183 catatggaggcggtggtgatggagagggtg 212  Q
    |||| ||||| |||||||| ||||| ||||    
T  24421424 catacggaggaggtggtgagggagatggtg 24421453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 24470399 - 24470270
Alignment:
Q  83 tagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtaga 182  Q
    ||||||||||| || ||||||||||| || ||||| |||||||||||||| ||||| || |  ||||| ||||| ||||| || || || |||||||| |    
T  24470399 tagacatatggtgggggaggtgaaggtgatggaggaggtggtgacttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgtaca 24470300  T
Q  183 catatggaggcggtggtgatggagagggtg 212  Q
    |||| ||||| |||||||| ||||| ||||    
T  24470299 catacggaggaggtggtgagggagatggtg 24470270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 212
Target Start/End: Original strand, 24420553 - 24420685
Alignment:
Q  80 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgt 179  Q
    ||||| |||||||||||||| |||||||| || ||||| || || ||||| || ||||| || |  || ||||| || |||||||| || || |||||||    
T  24420553 ttgtaaacatatggaggagggggtgaaggagaaggaggaggaggggacttatagacatatggaggtggtggtgaaggggatggtggtggtggtgacttgt 24420652  T
Q  180 agacatatggaggcggtggtgatggagagggtg 212  Q
    ||| |||||||||||||||||| ||||| ||||    
T  24420653 agatatatggaggcggtggtgaaggagatggtg 24420685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 24477602 - 24477726
Alignment:
Q  80 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgt 179  Q
    |||||||||| |||||| ||||| ||  | || ||||||||||| |||||||| ||||| || |  || |||||||| |||||||| ||||||||||| |    
T  24477602 ttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggaggaggtggtgagggagatggtggtggaggagacttat 24477701  T
Q  180 agacatatggaggcggtggtgatgg 204  Q
    ||||||| || || |||||||||||    
T  24477702 agacataaggtggtggtggtgatgg 24477726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 201
Target Start/End: Complemental strand, 24470644 - 24470521
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||||||||||||||| || ||||| || || || ||||||||   ||| || ||||| |||| ||||||||| || ||||| ||||| || |||||    
T  24470644 acttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggagatggaggaggtggtgactt 24470545  T
Q  178 gtagacatatggaggcggtggtga 201  Q
    ||||||||||||||| || |||||    
T  24470544 gtagacatatggaggaggaggtga 24470521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 24420743 - 24420857
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||| |||||||| || ||||| || || || ||||||||||| ||||| |||| ||||||||  ||||| || ||||||||||| || || |||||    
T  24420743 acttgtaaacatatggtgggggaggagagggagatggaggtggtggcgacttataaatatagggtggaggaggagaaggtgatggtgggggtggggactt 24420842  T
Q  178 gtagacatatggagg 192  Q
    ||| |||||||||||    
T  24420843 gtaaacatatggagg 24420857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 24421271 - 24421385
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||||||||||||||| || ||||| || || || ||||||||   ||| || ||||| |||| ||||||||| || ||||| ||||| || |||||    
T  24421271 acttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggagatggaggaggtggtgactt 24421370  T
Q  178 gtagacatatggagg 192  Q
    |||||||||||||||    
T  24421371 gtagacatatggagg 24421385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 24471027 - 24470893
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    |||| ||||| |||||||| || ||||||||||| || ||||||||||||||||| | ||| || |  || ||||| || |||| ||||||||| |||||    
T  24471027 acttatagacgtatggagggggtggtgaaggggatggtggtggtggtgacttgtagatatatggaggaggtggtgaaggagatgctggaggaggtgactt 24470928  T
Q  178 gtagacatatggaggcggtggtgatggagagggtg 212  Q
     || || |||||||| ||||| |||||||| ||||    
T  24470927 ataaacgtatggaggtggtggggatggagacggtg 24470893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 24481484 - 24481556
Alignment:
Q  119 ggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacatatggagg 192  Q
    ||||| |||||||| ||||| |||| ||| ||||| || |||||||||||||||||||||||||||||||||||    
T  24481484 ggtggcgacttgtatacatatggtg-gggtggtgatggagatggtggaggaggagacttgtagacatatggagg 24481556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 24471073 - 24470946
Alignment:
Q  80 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgt 179  Q
    ||||| |||||||||||||| |||||||| || ||||| || || ||||| || || || || | ||| ||||| || |||||||| || || |||||||    
T  24471073 ttgtaaacatatggaggagggggtgaaggagaaggaggaggaggggacttatagacgtatggagggggtggtgaaggggatggtggtggtggtgacttgt 24470974  T
Q  180 agacatatggaggcggtggtgatggaga 207  Q
    ||| ||||||||| |||||||| |||||    
T  24470973 agatatatggaggaggtggtgaaggaga 24470946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 204
Target Start/End: Complemental strand, 24470883 - 24470758
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||| |||||||| || ||||| || || || ||||| ||||||||||| || ||||| ||||  || ||||| ||||||||||| || ||||| ||    
T  24470883 acttgtaaacatatggtgg-ggaggagagggagatggaggaggtggtgacttatatacatatggtggagggggtgaaggtgatggtgggggtggagattt 24470785  T
Q  178 gtagacatatggaggcggtggtgatgg 204  Q
    |||||||||||| || ||||| |||||    
T  24470784 gtagacatatggtggtggtggagatgg 24470758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 24477408 - 24477542
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||||||||||||||| || ||||| || || ||  | || ||   |||||| ||||| |||| ||||||||| || ||||| ||||| || |||||    
T  24477408 acttgtagacatatggaggtggtggtgatggagaaggtagaggaggactcttgtagacatatggtgggggaggtgaaggagatggaggaggtggtgactt 24477507  T
Q  178 gtagacatatggaggcggtggtgatggagagggtg 212  Q
    ||||||||||||||| || ||||| ||||| ||||    
T  24477508 gtagacatatggaggtggaggtgagggagatggtg 24477542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 24406495 - 24406616
Alignment:
Q  79 cttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttg 178  Q
    |||||||| ||| ||||| || |||||||| || |||||||||||||||||  | ||||| ||||  |||||||| || |||||||| || ||||| |||    
T  24406495 cttgtagatataaggaggtggcggtgaaggcgaaggaggtggtggtgacttaaagacataaggtggaggaggtgaaggagatggtgggggtggagatttg 24406594  T
Q  179 tagacatatggaggcggtggtg 200  Q
    || ||||| || || |||||||    
T  24406595 taaacatacggtggtggtggtg 24406616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 24470828 - 24470707
Alignment:
Q  86 acatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacat 185  Q
    |||||||| ||||| |||||||| || || || ||||| || ||||| ||||| ||||  || || || || ||||||||||| || |||||||||||||    
T  24470828 acatatggtggagggggtgaaggtgatggtgggggtggagatttgtagacatatggtggtggtggagatggggatggtggaggtggtgacttgtagacat 24470729  T
Q  186 atggaggcggtggtgatggaga 207  Q
    ||||||| || ||||| |||||    
T  24470728 atggaggaggaggtgaaggaga 24470707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 24477285 - 24477350
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtg 143  Q
    ||||||||||||| || | |||||| |||||||| |||||||||||||| ||||||||| ||||||    
T  24477285 acttgtagacataaggtgaaggaggggaaggggatggaggtggtggtgatttgtaaacagagggtg 24477350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 201
Target Start/End: Original strand, 24421079 - 24421202
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||| | |||||| ||||| ||||| ||||| || |||||||| |||||||||| ||| || |  || || || || |||||||| || || |||||    
T  24421079 acttgtatatatatggtggagggggtgatggggatggtggtggtggggacttgtaaatatatggaggtggtggagatggggatggtggtggtggtgactt 24421178  T
Q  178 gtagacatatggaggcggtggtga 201  Q
    ||||||||||||||| || |||||    
T  24421179 gtagacatatggaggaggaggtga 24421202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 24406393 - 24406487
Alignment:
Q  79 cttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggag 173  Q
    |||||||| ||| ||||| || |||||||| || |||||||||||||||||  | ||||| ||||  |||||||| || ||||||||||| ||||    
T  24406393 cttgtagatataaggaggtggcggtgaaggcgaaggaggtggtggtgacttaaagacataaggtggaggaggtgaaggagatggtggaggtggag 24406487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 24477194 - 24477252
Alignment:
Q  131 taaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacatatgg 189  Q
    |||||||| |||| |||||| |||||||||||||||||| ||||||| || ||||||||    
T  24477194 taaacatacggtgggggaggagagggtgatggtggaggaagagacttatatacatatgg 24477252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 24477557 - 24477686
Alignment:
Q  83 tagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtaga 182  Q
    ||||||||||| || |||||  |||| |||||||| |||||||| ||||| ||||  || |  ||||| ||| | ||||| || || || |||||||| |    
T  24477557 tagacatatggtgggggagggaaaggagacggaggaggtggtgatttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtaca 24477656  T
Q  183 catatggaggcggtggtgatggagagggtg 212  Q
    |||||||||| |||||||| ||||| ||||    
T  24477657 catatggaggaggtggtgagggagatggtg 24477686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 24470920 - 24470821
Alignment:
Q  89 tatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacatatg 188  Q
    |||||||| || || || || ||||| || |||||||||||||||||||| |||| |||||| ||||| ||||| ||||| || ||||| || |||||||    
T  24470920 tatggaggtggtggggatggagacggtggaggtggtgacttgtaaacatatggtg-gggaggagagggagatggaggaggtggtgacttatatacatatg 24470822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 24420331 - 24420386
Alignment:
Q  146 ggaggtgagggtgatggtggaggaggagacttgtagacatatggaggcggtggtga 201  Q
    |||||||| || ||||||||||| ||||||||||| | ||| ||||||||||||||    
T  24420331 ggaggtgatggagatggtggaggtggagacttgtaaatataaggaggcggtggtga 24420386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 201
Target Start/End: Original strand, 24420503 - 24420626
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    |||| |||||||| || ||||| |||||||| || || || || || || ||||||||||| || |  || ||||| || || || |||||||| |||||    
T  24420503 acttatagacatagggtggagggggtgaaggagatggtgggggaggagatttgtaaacatatggaggagggggtgaaggagaaggaggaggaggggactt 24420602  T
Q  178 gtagacatatggaggcggtggtga 201  Q
     |||||||||||||| ||||||||    
T  24420603 atagacatatggaggtggtggtga 24420626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 24420706 - 24420779
Alignment:
Q  89 tatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatgg 162  Q
    |||||||| || || || || ||||| || |||||||||||||||||||| |||| |||||| ||||| |||||    
T  24420706 tatggaggtggtggggatggagacggtggaggtggtgacttgtaaacatatggtgggggaggagagggagatgg 24420779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 24420895 - 24421016
Alignment:
Q  86 acatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacat 185  Q
    |||||||| ||||| |||||||| || || || ||||| || ||||| ||||| || |  || || || || ||||||||||| || |||||||||||||    
T  24420895 acatatggtggagggggtgaaggtgatggtgggggtggagatttgtagacatatggaggtggtggagatggggatggtggaggtggtgacttgtagacat 24420994  T
Q  186 atggaggcggtggtgatggaga 207  Q
    |||| || || || ||||||||    
T  24420995 atggtggagggggggatggaga 24421016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 24477504 - 24477621
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||||||||||||||| |||||||| || || || ||||||||   ||| || ||||| |||| ||||||  | || || || ||||| || || ||    
T  24477504 acttgtagacatatggaggtggaggtgagggagatggtggtggtggactcttatagacatatggtgggggagggaaaggagacggaggaggtggtgattt 24477603  T
Q  178 gtagacatatggaggcgg 195  Q
    |||||||| |||||||||    
T  24477604 gtagacatgtggaggcgg 24477621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 24421127 - 24421235
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||| | ||||||||| || || || ||||| || ||||||||||||||||| ||||| || |  |||||||| || ||||| || || || |||||    
T  24421127 acttgtaaatatatggaggtggtggagatggggatggtggtggtggtgacttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgactt 24421226  T
Q  178 gtagacata 186  Q
    ||| |||||    
T  24421227 gtaaacata 24421235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 24471116 - 24471000
Alignment:
Q  85 gacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagaca 184  Q
    |||||| || |||||||||||||| || || || || || || ||||||||||| || |  || ||||| || || || |||||||| ||||| |||||     
T  24471116 gacatagggtggaggaggtgaaggagatggtgggggaggagatttgtaaacatatggaggagggggtgaaggagaaggaggaggaggggacttatagacg 24471017  T
Q  185 tatggaggcggtggtga 201  Q
    |||||||| ||||||||    
T  24471016 tatggagggggtggtga 24471000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 41899912 - 41900044
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    |||||||  ||||||||||||| ||||| ||||| || |||||||| |||||||||||||| || |  || |||||||| || ||||| || || |||||    
T  41899912 acttgtacgcatatggaggagggggtgacggggaaggcggtggtggggacttgtaaacatatggaggaggtggtgagggggaaggtggtggtggggactt 41900011  T
Q  178 gtagacatatggaggcggtggtgatggagaggg 210  Q
    |||||||||||| || || ||||| ||||||||    
T  41900012 gtagacatatggtggtggaggtgaaggagaggg 41900044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 41900346 - 41900448
Alignment:
Q  80 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgt 179  Q
    |||||||||||||| |||||| ||||||| || |||||||||||||||||||||| ||| ||||  || ||||| || |||||||| || || |||||||    
T  41900346 ttgtagacatatggtggaggaagtgaaggagaaggaggtggtggtgacttgtaaatataaggtggaggtggtgatggggatggtggtggtggggacttgt 41900445  T
Q  180 aga 182  Q
    |||    
T  41900446 aga 41900448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 41899960 - 41900068
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||| |||||||||||||| ||||| ||||| || |||||||| |||||||| ||||| ||||  |||||||| || || || ||||| ||||| ||    
T  41899960 acttgtaaacatatggaggaggtggtgagggggaaggtggtggtggggacttgtagacatatggtggtggaggtgaaggagagggaggaggtggagagtt 41900059  T
Q  178 gtagacata 186  Q
    |||||||||    
T  41900060 gtagacata 41900068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 41900280 - 41900332
Alignment:
Q  158 gatggtggaggaggagacttgtagacatatggaggcggtggtgatggagaggg 210  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  41900280 gatggtggaggaggagacttgtagacatatggaggtggtggtgaaggagaggg 41900332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 41900538 - 41900638
Alignment:
Q  80 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgt 179  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||| |||| ||| ||||  || ||||| || |||||||| || ||||| ||||    
T  41900538 ttgtagacatatggcggaggaggtgaaggagagggaggtggtggtgacttataaatataaggtggaggtggtgaaggagatggtggtggtggagatttgt 41900637  T
Q  180 a 180  Q
    |    
T  41900638 a 41900638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 41899826 - 41899939
Alignment:
Q  88 atatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacatat 187  Q
    |||||| |||||||||||||  || || || ||||| |||||||||||||| || |  || ||||| ||||||||||| ||||||||||||||  |||||    
T  41899826 atatggtggaggaggtgaagaagaaggtggaggtggagacttgtaaacatatggaggaggcggtgaaggtgatggtgggggaggagacttgtacgcatat 41899925  T
Q  188 ggaggcggtggtga 201  Q
    ||||| || |||||    
T  41899926 ggaggagggggtga 41899939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 41900008 - 41900140
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    |||||||||||||||| || ||||||||||| || ||||| ||||| || ||||| ||||| |    |||  | || |   ||||||| |||||||| ||    
T  41900008 acttgtagacatatggtggtggaggtgaaggagagggaggaggtggagagttgtagacataagaaaggggtagcgatgcatatggtggtggaggagattt 41900107  T
Q  178 gtagacatatggaggcggtggtgatggagaggg 210  Q
    ||| |||||||||||||||||||| ||||||||    
T  41900108 gtaaacatatggaggcggtggtgaaggagaggg 41900140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 41900154 - 41900256
Alignment:
Q  80 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgt 179  Q
    ||||||||||| || ||||||||||| || || ||| |||||||||||||||  ||||| || |  || ||||| || |||||||| || || |||||||    
T  41900154 ttgtagacatacggtggaggaggtgagggagaaggatgtggtggtgacttgtgcacataaggcggaggtggtgatggggatggtggtggtggggacttgt 41900253  T
Q  180 aga 182  Q
    |||    
T  41900254 aga 41900256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 41900296 - 41900422
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||||||||||||||| || |||||||| || |||||||| || || ||||| ||||| ||||  ||| |||| || || || || || || |||||    
T  41900296 acttgtagacatatggaggtggtggtgaaggagagggaggtggaggagatttgtagacatatggtggaggaagtgaaggagaaggaggtggtggtgactt 41900395  T
Q  178 gtagacatatggaggcggtggtgatgg 204  Q
    ||| | ||| || || |||||||||||    
T  41900396 gtaaatataaggtggaggtggtgatgg 41900422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 41900106 - 41900182
Alignment:
Q  80 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgaggg 156  Q
    ||||| ||||||||||| || |||||||| || |||||||| || || ||||| ||||| ||||  |||||||||||    
T  41900106 ttgtaaacatatggaggcggtggtgaaggagagggaggtggaggagatttgtagacatacggtggaggaggtgaggg 41900182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 41900472 - 41900524
Alignment:
Q  158 gatggtggaggaggagacttgtagacatatggaggcggtggtgatggagaggg 210  Q
    |||||||||||||||||||| ||||||||   |||  ||||||||||||||||    
T  41900472 gatggtggaggaggagacttatagacatacttaggttgtggtgatggagaggg 41900524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 201
Target Start/End: Complemental strand, 11902188 - 11902065
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 177  Q
    ||||||| || || ||||| || ||||| ||||| |||||||||||||||||||| ||||| || |  |  ||||| || |||||||| || || |||||    
T  11902188 acttgtacacgtaaggaggtgggggtgatggggatggaggtggtggtgacttgtacacataaggaggtgacggtgaaggagatggtggtggtggtgactt 11902089  T
Q  178 gtagacatatggaggcggtggtga 201  Q
    ||| ||||| ||||| ||||||||    
T  11902088 gtatacataaggaggtggtggtga 11902065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 11879544 - 11879484
Alignment:
Q  78 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacata 138  Q
    ||||||| ||||| ||||| || |||||||| || || ||||||||||||||||| |||||    
T  11879544 acttgtacacataaggaggtggtggtgaaggagatggcggtggtggtgacttgtacacata 11879484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 52821010 - 52821134
Alignment:
Q  88 atatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacatat 187  Q
    |||||| || ||||| || || || ||||||||||| |||||||||  ||| || |  ||||| |||||||| ||||| || ||||||||||||   ||     
T  52821010 atatggtggtggaggggacggtgaaggaggtggtggggacttgtaataatatggaggaggaggggagggtgagggtggtgggggagacttgtagtagtaa 52821109  T
Q  188 ggaggcggtggtgatggagagggtg 212  Q
    ||||| || ||||| ||||||||||    
T  52821110 ggaggtggaggtgagggagagggtg 52821134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1918 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 425 - 518
Alignment:
Q  87 catatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgta 180  Q
    ||||||| || |||||||| || || ||||||||||||||||||||||  || ||||  |||||||| |||||||| || || || ||||||||    
T  425 catatggtggtggaggtgacggtgatggaggtggtggtgacttgtaaatgtaaggtggtggaggtgatggtgatggaggtgggggtgacttgta 518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University