View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5277_low_2 (Length: 261)
Name: NF5277_low_2
Description: NF5277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5277_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 9904505 - 9904275
Alignment:
| Q |
11 |
caaagggaacaaaacttcctacaagtttgaaaccgtagttcaaagaaagttataaacatatagttaggaagagataaaaaagatgagtttctttaattaa |
110 |
Q |
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| T |
9904505 |
caaagggaacaaaacttcctacaagtttgaaaccgtagttcaaagaaagttataaacatatagttaggaagagataaaaaagatgagtttctttaattaa |
9904406 |
T |
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| Q |
111 |
tatgttctttcttccattccatttgagaaaatgcgcatagagctggacaaacagattagggttggtggttgttcatgggtgacatcttggtaggtgataa |
210 |
Q |
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| T |
9904405 |
tatgttctttcttccattccatttgagaaaatgcgcatagagctggacaaacagattagggttggtggttgttcatgggtgatattgtggtaggtgataa |
9904306 |
T |
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| Q |
211 |
tgatcaaccataatattacaagtgactttct |
241 |
Q |
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| T |
9904305 |
tgatcaaccataatgttataagtgattttct |
9904275 |
T |
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