View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5277_low_4 (Length: 255)

Name: NF5277_low_4
Description: NF5277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5277_low_4
NF5277_low_4
[»] scaffold0879 (6 HSPs)
scaffold0879 (119-244)||(4474-4599)
scaffold0879 (119-230)||(4680-4791)
scaffold0879 (119-233)||(4581-4695)
scaffold0879 (119-230)||(4536-4647)
scaffold0879 (20-53)||(4665-4698)
scaffold0879 (190-238)||(4816-4864)
[»] chr4 (36 HSPs)
chr4 (119-244)||(24421175-24421300)
chr4 (119-244)||(24470423-24470548)
chr4 (119-244)||(24470615-24470740)
chr4 (119-238)||(24420839-24420958)
chr4 (119-230)||(24420983-24421094)
chr4 (119-222)||(24421367-24421470)
chr4 (119-222)||(24470253-24470356)
chr4 (119-233)||(24470338-24470452)
chr4 (120-230)||(24477457-24477567)
chr4 (130-233)||(24420466-24420569)
chr4 (119-238)||(24420599-24420718)
chr4 (130-233)||(24471057-24471160)
chr4 (119-233)||(24420743-24420857)
chr4 (119-233)||(24421271-24421385)
chr4 (119-233)||(24470530-24470644)
chr4 (195-244)||(24477388-24477437)
chr4 (160-233)||(24481484-24481556)
chr4 (121-244)||(24477602-24477725)
chr4 (124-238)||(24421324-24421438)
chr4 (124-238)||(24470285-24470399)
chr4 (121-238)||(24420553-24420670)
chr4 (119-184)||(24477285-24477350)
chr4 (120-227)||(24406495-24406602)
chr4 (119-230)||(24470773-24470883)
chr4 (119-238)||(24470908-24471027)
chr4 (120-214)||(24406393-24406487)
chr4 (119-233)||(24421079-24421193)
chr4 (127-233)||(24470722-24470828)
chr4 (172-230)||(24477194-24477252)
chr4 (119-233)||(24477408-24477522)
chr4 (121-238)||(24470956-24471073)
chr4 (130-230)||(24470821-24470920)
chr4 (130-203)||(24420706-24420779)
chr4 (20-53)||(24421076-24421109)
chr4 (119-236)||(24477504-24477621)
chr4 (119-227)||(24421127-24421235)
[»] chr2 (9 HSPs)
chr2 (121-223)||(41900346-41900448)
chr2 (119-227)||(41899960-41900068)
chr2 (121-221)||(41900538-41900638)
chr2 (119-230)||(41899912-41900023)
chr2 (129-233)||(41899826-41899930)
chr2 (199-238)||(41900280-41900319)
chr2 (121-223)||(41900154-41900256)
chr2 (119-184)||(41900296-41900361)
chr2 (121-197)||(41900106-41900182)
[»] scaffold1918 (1 HSPs)
scaffold1918 (128-221)||(425-518)
[»] chr1 (2 HSPs)
chr1 (119-238)||(11902069-11902188)
chr1 (119-179)||(11879484-11879544)


Alignment Details
Target: scaffold0879 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 119 - 244
Target Start/End: Complemental strand, 4599 - 4474
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  4599 acttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgacttgtaaacatatggtgggggaggtgagggtgatggtggaggaggagactt 4500  T
Q  219 gtagacatatggaggcggtgatgatg 244  Q
    ||||||||||||||| |||| |||||    
T  4499 gtagacatatggaggtggtggtgatg 4474  T

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Target: scaffold0879; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 4791 - 4680
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    |||||||||||||||| ||||| || || || || || ||||||||||| || || ||||| |||| |||||| ||||||||||||||||||||||||||    
T  4791 acttgtagacatatggtggagggggggatggagatgggggtggtggtgatttatatacatatggtgggggaggggagggtgatggtggaggaggagactt 4692  T
Q  219 gtagacatatgg 230  Q
    ||| | ||||||    
T  4691 gtatatatatgg 4680  T

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Target: scaffold0879; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 4695 - 4581
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||| | |||||| ||||| ||||| ||||| || |||||||| |||||||||| ||| || |  || || || || |||||||| || || |||||    
T  4695 acttgtatatatatggtggagggggtgatggggatggtggtggtggggacttgtaaatatatggaggtggtggagatggggatggtggtggtggtgactt 4596  T
Q  219 gtagacatatggagg 233  Q
    |||||||||||||||    
T  4595 gtagacatatggagg 4581  T

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Target: scaffold0879; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 4647 - 4536
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||| | ||||||||| || || || ||||| || ||||||||||||||||| ||||| || |  |||||||| || ||||| || || || |||||    
T  4647 acttgtaaatatatggaggtggtggagatggggatggtggtggtggtgacttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgactt 4548  T
Q  219 gtagacatatgg 230  Q
    ||| ||||||||    
T  4547 gtaaacatatgg 4536  T

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Target: scaffold0879; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 4698 - 4665
Alignment:
Q  20 gagacttatatatatatggtggagggggtgatgg 53  Q
    ||||||| ||||||||||||||||||||||||||    
T  4698 gagacttgtatatatatggtggagggggtgatgg 4665  T

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Target: scaffold0879; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 4864 - 4816
Alignment:
Q  190 ggtgagggtgatggtggaggaggagacttgtagacatatggaggcggtg 238  Q
    ||||| ||||||||||| || ||||| ||||||||||||||||| ||||    
T  4864 ggtgaaggtgatggtgggggtggagatttgtagacatatggaggtggtg 4816  T

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Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 119 - 244
Target Start/End: Original strand, 24421175 - 24421300
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  24421175 acttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgacttgtaaacataaggtgggggaggtgagggtgatggtggaggaggagactt 24421274  T
Q  219 gtagacatatggaggcggtgatgatg 244  Q
    ||||||||||||||| |||| |||||    
T  24421275 gtagacatatggaggtggtggtgatg 24421300  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 119 - 244
Target Start/End: Complemental strand, 24470548 - 24470423
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  24470548 acttgtagacatatggaggaggaggtgaaggggaaggaggtggtggtgacttgtaaacatagggcgggggaggtgagggtgttggtggaggaggagactt 24470449  T
Q  219 gtagacatatggaggcggtgatgatg 244  Q
    ||||||||||||||| |||| |||||    
T  24470448 gtagacatatggaggtggtggtgatg 24470423  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 244
Target Start/End: Complemental strand, 24470740 - 24470615
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||| |||||||| |||||| || |||||||||||||||||||||||    
T  24470740 acttgtagacatatggaggaggaggtgaaggagatggaggtggtggcgacttataaatatagggtgggggaggagaaggtgatggtggaggaggagactt 24470641  T
Q  219 gtagacatatggaggcggtgatgatg 244  Q
    ||||||||||||||| |||| |||||    
T  24470640 gtagacatatggaggtggtggtgatg 24470615  T

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Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 24420839 - 24420958
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || ||||| ||||  || ||||| ||||||||||| || ||||| ||    
T  24420839 acttgtaaacatatggaggaggaggggaaggggaaggaggtggtggtgacttatatacatatggtggagggggtgaaggtgatggtgggggtggagattt 24420938  T
Q  219 gtagacatatggaggcggtg 238  Q
    ||||||||||||||| ||||    
T  24420939 gtagacatatggaggtggtg 24420958  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 24420983 - 24421094
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    |||||||||||||||| ||||| || || || || || ||||||||||| || || ||||| |||| |||||| ||||||||||||||||||||||||||    
T  24420983 acttgtagacatatggtggagggggggatggagatgggggtggtggtgatttatatacatatggtgggggaggggagggtgatggtggaggaggagactt 24421082  T
Q  219 gtagacatatgg 230  Q
    ||| | ||||||    
T  24421083 gtatatatatgg 24421094  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 24421367 - 24421470
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||| || |  || |||||||| ||||||||||| ||||| ||    
T  24421367 acttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggagattt 24421466  T
Q  219 gtag 222  Q
    ||||    
T  24421467 gtag 24421470  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 24470356 - 24470253
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||| || |  || |||||||| ||||||||||| ||||| ||    
T  24470356 acttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggagattt 24470257  T
Q  219 gtag 222  Q
    ||||    
T  24470256 gtag 24470253  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 24470452 - 24470338
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||||||||||||||| || ||||| || || || ||||||||   ||| || ||||| |||| ||||||||| |||||||| ||||| || |||||    
T  24470452 acttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggtgatggaggaggtggtgactt 24470353  T
Q  219 gtagacatatggagg 233  Q
    |||||||||||||||    
T  24470352 gtagacatatggagg 24470338  T

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Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 24477457 - 24477567
Alignment:
Q  120 cttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttg 219  Q
    ||||||||||||||| || ||||||||||| || ||||| |||||||||||||| ||||| || |  ||||||||||| |||||||| || |||  |||     
T  24477457 cttgtagacatatggtgggggaggtgaaggagatggaggaggtggtgacttgtagacatatggaggtggaggtgagggagatggtggtggtggactctta 24477556  T
Q  220 tagacatatgg 230  Q
    |||||||||||    
T  24477557 tagacatatgg 24477567  T

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Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 24420466 - 24420569
Alignment:
Q  130 tatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacatatg 229  Q
    ||||||||||| |||||||  || |||||||| |||||||| || ||||||||||  || ||||| || |||||||| |||||||| ||||| |||||||    
T  24420466 tatggaggaggtggtgaagctgaaggaggtggaggtgacttatagacatagggtggagggggtgaaggagatggtgggggaggagatttgtaaacatatg 24420565  T
Q  230 gagg 233  Q
    ||||    
T  24420566 gagg 24420569  T

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Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 24420599 - 24420718
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    |||| |||||||||||||| || ||||||||||| || ||||||||||||||||| | ||| || |  || ||||| || ||||||||||||||||| ||    
T  24420599 acttatagacatatggaggtggtggtgaaggggatggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagattt 24420698  T
Q  219 gtagacatatggaggcggtg 238  Q
     || || |||||||| ||||    
T  24420699 ataaacgtatggaggtggtg 24420718  T

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Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 24471160 - 24471057
Alignment:
Q  130 tatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacatatg 229  Q
    ||||||||||| |||||||  || |||||||| |||||||| |  ||||||||||  |||||||| || |||||||| |||||||| ||||| |||||||    
T  24471160 tatggaggaggtggtgaagctgaaggaggtggaggtgacttatggacatagggtggaggaggtgaaggagatggtgggggaggagatttgtaaacatatg 24471061  T
Q  230 gagg 233  Q
    ||||    
T  24471060 gagg 24471057  T

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Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 24420743 - 24420857
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||| |||||||| || ||||| || || || ||||||||||| ||||| |||| ||||||||  ||||| || ||||||||||| || || |||||    
T  24420743 acttgtaaacatatggtgggggaggagagggagatggaggtggtggcgacttataaatatagggtggaggaggagaaggtgatggtgggggtggggactt 24420842  T
Q  219 gtagacatatggagg 233  Q
    ||| |||||||||||    
T  24420843 gtaaacatatggagg 24420857  T

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Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 24421271 - 24421385
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||||||||||||||| || ||||| || || || ||||||||   ||| || ||||| |||| ||||||||| || ||||| ||||| || |||||    
T  24421271 acttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggagatggaggaggtggtgactt 24421370  T
Q  219 gtagacatatggagg 233  Q
    |||||||||||||||    
T  24421371 gtagacatatggagg 24421385  T

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Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 24470644 - 24470530
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||||||||||||||| || ||||| || || || ||||||||   ||| || ||||| |||| ||||||||| || ||||| ||||| || |||||    
T  24470644 acttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggagatggaggaggtggtgactt 24470545  T
Q  219 gtagacatatggagg 233  Q
    |||||||||||||||    
T  24470544 gtagacatatggagg 24470530  T

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Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 24477388 - 24477437
Alignment:
Q  195 gggtgatggtggaggaggagacttgtagacatatggaggcggtgatgatg 244  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  24477388 gggtgatggtggaggaggagacttgtagacatatggaggtggtggtgatg 24477437  T

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Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 24481484 - 24481556
Alignment:
Q  160 ggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacatatggagg 233  Q
    ||||| |||||||| ||||| |||| ||| ||||| || |||||||||||||||||||||||||||||||||||    
T  24481484 ggtggcgacttgtatacatatggtg-gggtggtgatggagatggtggaggaggagacttgtagacatatggagg 24481556  T

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Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 244
Target Start/End: Original strand, 24477602 - 24477725
Alignment:
Q  121 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgt 220  Q
    |||||||||| |||||| ||||| ||  | || ||||||||||| |||||||| ||||| || |  || |||||||| |||||||| ||||||||||| |    
T  24477602 ttgtagacatgtggaggcggaggagagagagatggaggtggtggggacttgtacacatatggaggaggtggtgagggagatggtggtggaggagacttat 24477701  T
Q  221 agacatatggaggcggtgatgatg 244  Q
    ||||||| || || |||| |||||    
T  24477702 agacataaggtggtggtggtgatg 24477725  T

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Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 24421324 - 24421438
Alignment:
Q  124 tagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtaga 223  Q
    ||||||||||| || ||||||||||| || ||||| |||||||||||||| ||||| || |  ||||| ||||| ||||| || || || |||||||| |    
T  24421324 tagacatatggtgggggaggtgaaggagatggaggaggtggtgacttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgtaca 24421423  T
Q  224 catatggaggcggtg 238  Q
    |||| ||||| ||||    
T  24421424 catacggaggaggtg 24421438  T

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Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 24470399 - 24470285
Alignment:
Q  124 tagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtaga 223  Q
    ||||||||||| || ||||||||||| || ||||| |||||||||||||| ||||| || |  ||||| ||||| ||||| || || || |||||||| |    
T  24470399 tagacatatggtgggggaggtgaaggtgatggaggaggtggtgacttgtagacatatggaggaggaggagagggagatggaggtggtggggacttgtaca 24470300  T
Q  224 catatggaggcggtg 238  Q
    |||| ||||| ||||    
T  24470299 catacggaggaggtg 24470285  T

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Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 24420553 - 24420670
Alignment:
Q  121 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgt 220  Q
    ||||| |||||||||||||| |||||||| || ||||| || || ||||| || ||||| || |  || ||||| || |||||||| || || |||||||    
T  24420553 ttgtaaacatatggaggagggggtgaaggagaaggaggaggaggggacttatagacatatggaggtggtggtgaaggggatggtggtggtggtgacttgt 24420652  T
Q  221 agacatatggaggcggtg 238  Q
    ||| ||||||||||||||    
T  24420653 agatatatggaggcggtg 24420670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 24477285 - 24477350
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtg 184  Q
    ||||||||||||| || | |||||| |||||||| |||||||||||||| ||||||||| ||||||    
T  24477285 acttgtagacataaggtgaaggaggggaaggggatggaggtggtggtgatttgtaaacagagggtg 24477350  T

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Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 24406495 - 24406602
Alignment:
Q  120 cttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttg 219  Q
    |||||||| ||| ||||| || |||||||| || |||||||||||||||||  | ||||| ||||  |||||||| || |||||||| || ||||| |||    
T  24406495 cttgtagatataaggaggtggcggtgaaggcgaaggaggtggtggtgacttaaagacataaggtggaggaggtgaaggagatggtgggggtggagatttg 24406594  T
Q  220 tagacata 227  Q
    || |||||    
T  24406595 taaacata 24406602  T

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Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 24470883 - 24470773
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||| |||||||| || ||||| || || || ||||| ||||||||||| || ||||| ||||  || ||||| ||||||||||| || ||||| ||    
T  24470883 acttgtaaacatatggtgg-ggaggagagggagatggaggaggtggtgacttatatacatatggtggagggggtgaaggtgatggtgggggtggagattt 24470785  T
Q  219 gtagacatatgg 230  Q
    ||||||||||||    
T  24470784 gtagacatatgg 24470773  T

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Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 24471027 - 24470908
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    |||| ||||| |||||||| || ||||||||||| || ||||||||||||||||| | ||| || |  || ||||| || |||| ||||||||| |||||    
T  24471027 acttatagacgtatggagggggtggtgaaggggatggtggtggtggtgacttgtagatatatggaggaggtggtgaaggagatgctggaggaggtgactt 24470928  T
Q  219 gtagacatatggaggcggtg 238  Q
     || || |||||||| ||||    
T  24470927 ataaacgtatggaggtggtg 24470908  T

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Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 24406393 - 24406487
Alignment:
Q  120 cttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggag 214  Q
    |||||||| ||| ||||| || |||||||| || |||||||||||||||||  | ||||| ||||  |||||||| || ||||||||||| ||||    
T  24406393 cttgtagatataaggaggtggcggtgaaggcgaaggaggtggtggtgacttaaagacataaggtggaggaggtgaaggagatggtggaggtggag 24406487  T

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Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 24421079 - 24421193
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||| | |||||| ||||| ||||| ||||| || |||||||| |||||||||| ||| || |  || || || || |||||||| || || |||||    
T  24421079 acttgtatatatatggtggagggggtgatggggatggtggtggtggggacttgtaaatatatggaggtggtggagatggggatggtggtggtggtgactt 24421178  T
Q  219 gtagacatatggagg 233  Q
    |||||||||||||||    
T  24421179 gtagacatatggagg 24421193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 24470828 - 24470722
Alignment:
Q  127 acatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacat 226  Q
    |||||||| ||||| |||||||| || || || ||||| || ||||| ||||| ||||  || || || || ||||||||||| || |||||||||||||    
T  24470828 acatatggtggagggggtgaaggtgatggtgggggtggagatttgtagacatatggtggtggtggagatggggatggtggaggtggtgacttgtagacat 24470729  T
Q  227 atggagg 233  Q
    |||||||    
T  24470728 atggagg 24470722  T

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Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 24477194 - 24477252
Alignment:
Q  172 taaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacatatgg 230  Q
    |||||||| |||| |||||| |||||||||||||||||| ||||||| || ||||||||    
T  24477194 taaacatacggtgggggaggagagggtgatggtggaggaagagacttatatacatatgg 24477252  T

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Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 24477408 - 24477522
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||||||||||||||| || ||||| || || ||  | || ||   |||||| ||||| |||| ||||||||| || ||||| ||||| || |||||    
T  24477408 acttgtagacatatggaggtggtggtgatggagaaggtagaggaggactcttgtagacatatggtgggggaggtgaaggagatggaggaggtggtgactt 24477507  T
Q  219 gtagacatatggagg 233  Q
    |||||||||||||||    
T  24477508 gtagacatatggagg 24477522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 24471073 - 24470956
Alignment:
Q  121 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgt 220  Q
    ||||| |||||||||||||| |||||||| || ||||| || || ||||| || || || || | ||| ||||| || |||||||| || || |||||||    
T  24471073 ttgtaaacatatggaggagggggtgaaggagaaggaggaggaggggacttatagacgtatggagggggtggtgaaggggatggtggtggtggtgacttgt 24470974  T
Q  221 agacatatggaggcggtg 238  Q
    ||| ||||||||| ||||    
T  24470973 agatatatggaggaggtg 24470956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 24470920 - 24470821
Alignment:
Q  130 tatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacatatg 229  Q
    |||||||| || || || || ||||| || |||||||||||||||||||| |||| |||||| ||||| ||||| ||||| || ||||| || |||||||    
T  24470920 tatggaggtggtggggatggagacggtggaggtggtgacttgtaaacatatggtg-gggaggagagggagatggaggaggtggtgacttatatacatatg 24470822  T

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Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 24420706 - 24420779
Alignment:
Q  130 tatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatgg 203  Q
    |||||||| || || || || ||||| || |||||||||||||||||||| |||| |||||| ||||| |||||    
T  24420706 tatggaggtggtggggatggagacggtggaggtggtgacttgtaaacatatggtgggggaggagagggagatgg 24420779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 24421076 - 24421109
Alignment:
Q  20 gagacttatatatatatggtggagggggtgatgg 53  Q
    ||||||| ||||||||||||||||||||||||||    
T  24421076 gagacttgtatatatatggtggagggggtgatgg 24421109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 24477504 - 24477621
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||||||||||||||| |||||||| || || || ||||||||   ||| || ||||| |||| ||||||  | || || || ||||| || || ||    
T  24477504 acttgtagacatatggaggtggaggtgagggagatggtggtggtggactcttatagacatatggtgggggagggaaaggagacggaggaggtggtgattt 24477603  T
Q  219 gtagacatatggaggcgg 236  Q
    |||||||| |||||||||    
T  24477604 gtagacatgtggaggcgg 24477621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 24421127 - 24421235
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||| | ||||||||| || || || ||||| || ||||||||||||||||| ||||| || |  |||||||| || ||||| || || || |||||    
T  24421127 acttgtaaatatatggaggtggtggagatggggatggtggtggtggtgacttgtagacatatggaggaggaggtgaaggggatggaggtggtggtgactt 24421226  T
Q  219 gtagacata 227  Q
    ||| |||||    
T  24421227 gtaaacata 24421235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 41900346 - 41900448
Alignment:
Q  121 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgt 220  Q
    |||||||||||||| |||||| ||||||| || |||||||||||||||||||||| ||| ||||  || ||||| || |||||||| || || |||||||    
T  41900346 ttgtagacatatggtggaggaagtgaaggagaaggaggtggtggtgacttgtaaatataaggtggaggtggtgatggggatggtggtggtggggacttgt 41900445  T
Q  221 aga 223  Q
    |||    
T  41900446 aga 41900448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 41899960 - 41900068
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||| |||||||||||||| ||||| ||||| || |||||||| |||||||| ||||| ||||  |||||||| || || || ||||| ||||| ||    
T  41899960 acttgtaaacatatggaggaggtggtgagggggaaggtggtggtggggacttgtagacatatggtggtggaggtgaaggagagggaggaggtggagagtt 41900059  T
Q  219 gtagacata 227  Q
    |||||||||    
T  41900060 gtagacata 41900068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 41900538 - 41900638
Alignment:
Q  121 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgt 220  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||| |||| ||| ||||  || ||||| || |||||||| || ||||| ||||    
T  41900538 ttgtagacatatggcggaggaggtgaaggagagggaggtggtggtgacttataaatataaggtggaggtggtgaaggagatggtggtggtggagatttgt 41900637  T
Q  221 a 221  Q
    |    
T  41900638 a 41900638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 41899912 - 41900023
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    |||||||  ||||||||||||| ||||| ||||| || |||||||| |||||||||||||| || |  || |||||||| || ||||| || || |||||    
T  41899912 acttgtacgcatatggaggagggggtgacggggaaggcggtggtggggacttgtaaacatatggaggaggtggtgagggggaaggtggtggtggggactt 41900011  T
Q  219 gtagacatatgg 230  Q
    ||||||||||||    
T  41900012 gtagacatatgg 41900023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 41899826 - 41899930
Alignment:
Q  129 atatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgtagacatat 228  Q
    |||||| |||||||||||||  || || || ||||| |||||||||||||| || |  || ||||| ||||||||||| ||||||||||||||  |||||    
T  41899826 atatggtggaggaggtgaagaagaaggtggaggtggagacttgtaaacatatggaggaggcggtgaaggtgatggtgggggaggagacttgtacgcatat 41899925  T
Q  229 ggagg 233  Q
    |||||    
T  41899926 ggagg 41899930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 41900280 - 41900319
Alignment:
Q  199 gatggtggaggaggagacttgtagacatatggaggcggtg 238  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  41900280 gatggtggaggaggagacttgtagacatatggaggtggtg 41900319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 41900154 - 41900256
Alignment:
Q  121 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgt 220  Q
    ||||||||||| || ||||||||||| || || ||| |||||||||||||||  ||||| || |  || ||||| || |||||||| || || |||||||    
T  41900154 ttgtagacatacggtggaggaggtgagggagaaggatgtggtggtgacttgtgcacataaggcggaggtggtgatggggatggtggtggtggggacttgt 41900253  T
Q  221 aga 223  Q
    |||    
T  41900254 aga 41900256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 41900296 - 41900361
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtg 184  Q
    ||||||||||||||||||| || |||||||| || |||||||| || || ||||| ||||| ||||    
T  41900296 acttgtagacatatggaggtggtggtgaaggagagggaggtggaggagatttgtagacatatggtg 41900361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 41900106 - 41900182
Alignment:
Q  121 ttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgaggg 197  Q
    ||||| ||||||||||| || |||||||| || |||||||| || || ||||| ||||| ||||  |||||||||||    
T  41900106 ttgtaaacatatggaggcggtggtgaaggagagggaggtggaggagatttgtagacatacggtggaggaggtgaggg 41900182  T

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Target: scaffold1918 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 425 - 518
Alignment:
Q  128 catatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagacttgta 221  Q
    ||||||| || |||||||| || || ||||||||||||||||||||||  || ||||  |||||||| |||||||| || || || ||||||||    
T  425 catatggtggtggaggtgacggtgatggaggtggtggtgacttgtaaatgtaaggtggtggaggtgatggtgatggaggtgggggtgacttgta 518  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 11902188 - 11902069
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacatagggtgtgggaggtgagggtgatggtggaggaggagactt 218  Q
    ||||||| || || ||||| || ||||| ||||| |||||||||||||||||||| ||||| || |  |  ||||| || |||||||| || || |||||    
T  11902188 acttgtacacgtaaggaggtgggggtgatggggatggaggtggtggtgacttgtacacataaggaggtgacggtgaaggagatggtggtggtggtgactt 11902089  T
Q  219 gtagacatatggaggcggtg 238  Q
    ||| ||||| ||||| ||||    
T  11902088 gtatacataaggaggtggtg 11902069  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 11879544 - 11879484
Alignment:
Q  119 acttgtagacatatggaggaggaggtgaaggggacggaggtggtggtgacttgtaaacata 179  Q
    ||||||| ||||| ||||| || |||||||| || || ||||||||||||||||| |||||    
T  11879544 acttgtacacataaggaggtggtggtgaaggagatggcggtggtggtgacttgtacacata 11879484  T

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