View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5279-Insertion-3 (Length: 300)

Name: NF5279-Insertion-3
Description: NF5279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5279-Insertion-3
NF5279-Insertion-3
[»] chr2 (20 HSPs)
chr2 (8-61)||(28670248-28670301)
chr2 (8-61)||(28639382-28639435)
chr2 (8-61)||(28648689-28648742)
chr2 (184-243)||(4772823-4772882)
chr2 (184-243)||(8044601-8044660)
chr2 (184-243)||(29676284-29676343)
chr2 (184-243)||(29695394-29695453)
chr2 (184-243)||(32667173-32667232)
chr2 (184-241)||(10542118-10542175)
chr2 (184-243)||(883656-883715)
chr2 (196-243)||(10570925-10570972)
chr2 (184-243)||(17727394-17727453)
chr2 (184-234)||(4877457-4877507)
chr2 (184-241)||(12419830-12419887)
chr2 (184-241)||(12431890-12431947)
chr2 (196-241)||(25621352-25621397)
chr2 (184-233)||(33277400-33277449)
chr2 (184-241)||(39108080-39108137)
chr2 (184-241)||(39386662-39386719)
chr2 (184-236)||(26847297-26847349)
[»] chr7 (24 HSPs)
chr7 (186-245)||(4258261-4258320)
chr7 (185-243)||(4258056-4258114)
chr7 (184-243)||(6783028-6783087)
chr7 (184-239)||(6813133-6813188)
chr7 (184-243)||(16565088-16565147)
chr7 (184-243)||(16600515-16600574)
chr7 (184-241)||(6782818-6782875)
chr7 (184-241)||(6813338-6813395)
chr7 (184-241)||(10903539-10903596)
chr7 (184-241)||(21557008-21557065)
chr7 (184-241)||(35866694-35866751)
chr7 (184-243)||(5266349-5266408)
chr7 (184-243)||(10903332-10903391)
chr7 (184-243)||(23390580-23390639)
chr7 (184-243)||(33834145-33834204)
chr7 (184-243)||(48113987-48114046)
chr7 (184-242)||(31357730-31357788)
chr7 (184-241)||(5775874-5775931)
chr7 (186-243)||(6751562-6751619)
chr7 (184-241)||(16564886-16564943)
chr7 (184-241)||(16600719-16600776)
chr7 (184-241)||(23821731-23821788)
chr7 (184-241)||(40703914-40703971)
chr7 (130-170)||(2938249-2938289)
[»] chr5 (13 HSPs)
chr5 (184-243)||(18107533-18107592)
chr5 (184-243)||(1893778-1893837)
chr5 (186-241)||(4563748-4563803)
chr5 (187-241)||(20720608-20720662)
chr5 (184-241)||(36878318-36878375)
chr5 (196-241)||(37781911-37781956)
chr5 (184-241)||(39268010-39268067)
chr5 (196-243)||(37656799-37656846)
chr5 (184-243)||(39268216-39268275)
chr5 (184-243)||(43490311-43490370)
chr5 (184-241)||(13413576-13413633)
chr5 (184-241)||(38376723-38376780)
chr5 (201-241)||(35656914-35656954)
[»] chr3 (17 HSPs)
chr3 (184-242)||(50338437-50338495)
chr3 (186-243)||(27177607-27177664)
chr3 (184-244)||(26915105-26915165)
chr3 (196-244)||(35358520-35358568)
chr3 (184-243)||(27177402-27177461)
chr3 (184-243)||(40230489-40230548)
chr3 (184-243)||(50692516-50692575)
chr3 (184-226)||(25399284-25399326)
chr3 (183-241)||(32034083-32034141)
chr3 (188-245)||(1715143-1715200)
chr3 (195-244)||(29369790-29369839)
chr3 (184-241)||(38421977-38422034)
chr3 (184-241)||(40926446-40926503)
chr3 (196-241)||(51338508-51338553)
chr3 (196-241)||(53640239-53640284)
chr3 (184-244)||(25578736-25578795)
chr3 (184-244)||(44367568-44367628)
[»] chr8 (12 HSPs)
chr8 (184-241)||(33435671-33435728)
chr8 (195-243)||(30065981-30066029)
chr8 (184-243)||(33435873-33435932)
chr8 (184-241)||(30176519-30176576)
chr8 (184-241)||(43599303-43599360)
chr8 (196-243)||(15857169-15857216)
chr8 (184-243)||(43901072-43901131)
chr8 (184-234)||(31711797-31711847)
chr8 (184-241)||(12941562-12941619)
chr8 (186-243)||(39705771-39705828)
chr8 (184-236)||(30117491-30117543)
chr8 (195-243)||(42447252-42447300)
[»] chr6 (9 HSPs)
chr6 (184-241)||(15293929-15293986)
chr6 (184-243)||(15102680-15102739)
chr6 (184-243)||(15102807-15102865)
chr6 (184-241)||(11316835-11316892)
chr6 (206-243)||(13692245-13692282)
chr6 (184-243)||(2923011-2923070)
chr6 (184-243)||(11317038-11317097)
chr6 (184-242)||(26394542-26394600)
chr6 (195-244)||(12124760-12124809)
[»] chr4 (23 HSPs)
chr4 (184-240)||(3055776-3055832)
chr4 (184-243)||(28245983-28246042)
chr4 (184-241)||(26806503-26806560)
chr4 (184-241)||(28497269-28497326)
chr4 (184-243)||(1923046-1923105)
chr4 (129-184)||(6218471-6218526)
chr4 (184-243)||(8305010-8305069)
chr4 (188-243)||(17076999-17077054)
chr4 (188-243)||(17077203-17077258)
chr4 (184-243)||(29113439-29113498)
chr4 (184-243)||(33629911-33629970)
chr4 (196-243)||(39110897-39110944)
chr4 (184-243)||(52827287-52827346)
chr4 (185-244)||(53720726-53720785)
chr4 (184-242)||(3640197-3640255)
chr4 (184-234)||(12879514-12879564)
chr4 (206-244)||(41743227-41743265)
chr4 (186-243)||(3640446-3640503)
chr4 (196-241)||(5065845-5065890)
chr4 (184-241)||(25753660-25753717)
chr4 (184-241)||(43943665-43943722)
chr4 (184-241)||(49380935-49380992)
chr4 (201-241)||(3047474-3047514)
[»] chr1 (14 HSPs)
chr1 (184-244)||(42845076-42845136)
chr1 (207-241)||(49895145-49895179)
chr1 (184-241)||(38871210-38871267)
chr1 (184-241)||(45395544-45395601)
chr1 (184-241)||(52921522-52921579)
chr1 (184-243)||(36332301-36332360)
chr1 (184-239)||(49828665-49828720)
chr1 (184-242)||(39649139-39649197)
chr1 (184-241)||(1233918-1233975)
chr1 (184-241)||(13959394-13959451)
chr1 (184-233)||(40315913-40315962)
chr1 (185-241)||(5222686-5222742)
chr1 (207-243)||(22892499-22892535)
chr1 (195-243)||(47377825-47377873)
[»] scaffold1138 (1 HSPs)
scaffold1138 (182-234)||(1926-1978)


Alignment Details
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 28670301 - 28670248
Alignment:
Q  8 tcatggagctcttgtagtgaacattggagatcttctccaggtgagttcatcatg 61  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  28670301 tcatggagctcttgtagtgaacattggagatcttctacaggtgagtacatcatg 28670248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 28639435 - 28639382
Alignment:
Q  8 tcatggagctcttgtagtgaacattggagatcttctccaggtgagttcatcatg 61  Q
    |||||||||||||||||||||| | ||||||||||| |||||||||||||||||    
T  28639435 tcatggagctcttgtagtgaacgtcggagatcttctacaggtgagttcatcatg 28639382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 28648742 - 28648689
Alignment:
Q  8 tcatggagctcttgtagtgaacattggagatcttctccaggtgagttcatcatg 61  Q
    |||||||||||||||||||||| |||| |||||||| || ||||||||||||||    
T  28648742 tcatggagctcttgtagtgaacgttggggatcttcttcaagtgagttcatcatg 28648689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 4772823 - 4772882
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| |||||||||||||||| |||||||||||| | ||||||    
T  4772823 tataaactcttatcaagagtcatatctatctgatgtgaaacttgagttttttctaataca 4772882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 8044601 - 8044660
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| ||||||||||||| | |||||| |||||||||||||||    
T  8044601 tataaactcttatcaagagtcttatctatctgatgcgggacttgggtttttcccaataca 8044660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 29676343 - 29676284
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| |||||||| |||||||||| || |||||||||||||||    
T  29676343 tataaactcttatcaagagtcttatctatccgatgtgagacatgtgtttttcccaataca 29676284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 29695394 - 29695453
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    ||||||||||  |||| |||| |||||||| ||||||||||||| |||||||||||||||    
T  29695394 tataaactcttctcaagagtcttatctatccgatgtgagacttgggtttttcccaataca 29695453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 32667232 - 32667173
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| ||||||||||||||| |||||  |||||||||||||||    
T  32667232 tataaactcttatcaagagtcttatctatctgatgtgggacttcggtttttcccaataca 32667173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 10542118 - 10542175
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| ||| | |||||||| ||||| ||||||||||||||||||||    
T  10542118 tataaactcttatcaagagttcaatctatctaatgtgggacttgagtttttcccaata 10542175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 883656 - 883715
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    ||||||||||  |||| |||| |||||||| |||||| |||||| |||||||||||||||    
T  883656 tataaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaataca 883715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 10570972 - 10570925
Alignment:
Q  196 tcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||| |||| ||||||||||||||| |||||| |||||||||||||||    
T  10570972 tcaagagtcttatctatctgatgtgggacttgggtttttcccaataca 10570925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 17727453 - 17727394
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    ||||||||||  |||| |||| |||||||| |||||| |||||| |||||||||||||||    
T  17727453 tataaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaataca 17727394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 4877457 - 4877507
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagttttt 234  Q
    |||||||||| | ||| || | |||||||||||||||||||||||||||||    
T  4877457 tataaactcttagcaagagacttatctatctgatgtgagacttgagttttt 4877507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 12419887 - 12419830
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    ||||||||||  |||| |||| |||||||| |||||| |||||| |||||||||||||    
T  12419887 tataaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 12419830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 12431947 - 12431890
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    ||||||||||  |||| |||| |||||||| |||||| |||||| |||||||||||||    
T  12431947 tataaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 12431890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 25621352 - 25621397
Alignment:
Q  196 tcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||| |||| |||||||| ||||||||||||| |||||||||||||    
T  25621352 tcaagagtcttatctatccgatgtgagacttgggtttttcccaata 25621397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 33277400 - 33277449
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttt 233  Q
    |||||||||| || || |||| ||||||||| ||||||||||||||||||    
T  33277400 tataaactcttatgaaaagtcatatctatcttatgtgagacttgagtttt 33277449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 39108137 - 39108080
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| | || ||| ||||||||||| ||||||| ||||||||||||    
T  39108137 tataaactcttatcaagattcttatatatctgatgtgggacttgaatttttcccaata 39108080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 39386719 - 39386662
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| |||| |||||||| |||||| ||| || |||||||||||||    
T  39386719 tataaactcttatcaagagtcttatctatccgatgtgggacatgggtttttcccaata 39386662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 26847297 - 26847349
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcc 236  Q
    |||||||||| ||||| |||||||||||||  ||||| |||||| ||||||||    
T  26847297 tataaactcttatcaagagtcctatctatccaatgtgggacttgggtttttcc 26847349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 4258261 - 4258320
Alignment:
Q  186 taaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaatacatt 245  Q
    |||||||| ||||| |||| |||||||| |||||| ||||||||||||||||||||||||    
T  4258261 taaactcttatcaagagtcttatctatccgatgtgggacttgagtttttcccaatacatt 4258320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 4258056 - 4258114
Alignment:
Q  185 ataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    ||||||||| ||||| |||| |||||||| ||||||||||||| |||||||||||||||    
T  4258056 ataaactcttatcaagagtcttatctatccgatgtgagacttgggtttttcccaataca 4258114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 6783087 - 6783028
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    ||||||||||  |||| |||| |||||||| ||||||||||||| |||||||||||||||    
T  6783087 tataaactcttctcaagagtcttatctatccgatgtgagacttgggtttttcccaataca 6783028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 6813133 - 6813188
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaa 239  Q
    |||||||||||||||| ||||| ||||||| |||||| |||||| |||||||||||    
T  6813133 tataaactctcatcaagagtcccatctatccgatgtgggacttgtgtttttcccaa 6813188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 16565147 - 16565088
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| |||||||| |||||| |||||| |||||||||||||||    
T  16565147 tataaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaataca 16565088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 16600515 - 16600574
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| |||||||| |||||| |||||| |||||||||||||||    
T  16600515 tataaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaataca 16600574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 6782875 - 6782818
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    ||||||||||  |||| |||| |||||||| ||||||||||||| |||||||||||||    
T  6782875 tataaactcttctcaagagtcttatctatccgatgtgagacttgggtttttcccaata 6782818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 6813338 - 6813395
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||||||||| ||||| |||||||||||| | |||||| | |||||||||||    
T  6813338 tataaactctcatcaagagtcccatctatctgatgcgggacttggggttttcccaata 6813395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 10903539 - 10903596
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| |||| |||||||| |||||| ||| ||||||||||||||||    
T  10903539 tataaactcttatcaagagtcttatctatccgatgtgggacatgagtttttcccaata 10903596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 21557065 - 21557008
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| ||| ||||||||| |||||| ||||||||||||| ||||||    
T  21557065 tataaactcttatcaagagttctatctatccgatgtgggacttgagttttttccaata 21557008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 35866694 - 35866751
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| |||| |||||||| |||||| |||||| |||||||||||||    
T  35866694 tataaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaata 35866751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 5266408 - 5266349
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    ||||| |||| ||||| |||| ||||||||||||||| ||| || |||||||||||||||    
T  5266408 tataatctcttatcaagagtcttatctatctgatgtgggacatgggtttttcccaataca 5266349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 10903332 - 10903391
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| |||||||| |||||| ||| || |||||||||||||||    
T  10903332 tataaactcttatcaagagtcttatctatccgatgtgggacatgtgtttttcccaataca 10903391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 23390639 - 23390580
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| |||||||| |||||| ||| || |||||||||||||||    
T  23390639 tataaactcttatcaagagtcttatctatccgatgtgggacatgggtttttcccaataca 23390580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 33834204 - 33834145
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| ||||||||||||||| ||| ||  ||||||||||||||    
T  33834204 tataaactcttatcaagagtcttatctatctgatgtgggacatggatttttcccaataca 33834145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 48114046 - 48113987
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| |||||||| |||||| |||||| ||| |||||||||||    
T  48114046 tataaactcttatcaagagtcttatctatccgatgtgggacttgggttattcccaataca 48113987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 31357730 - 31357788
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaatac 242  Q
    |||||||||| ||||| |||| |||||||| |||||| ||| || ||||||||||||||    
T  31357730 tataaactcttatcaagagtcttatctatccgatgtgggacatgggtttttcccaatac 31357788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 5775931 - 5775874
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    ||||||||||||| || ||||  ||||||  |||||| ||||||||||||||||||||    
T  5775931 tataaactctcattaagagtctcatctatgcgatgtgggacttgagtttttcccaata 5775874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 6751562 - 6751619
Alignment:
Q  186 taaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||||||| ||||  ||||||| ||| || |||||| |||||||||||||||    
T  6751562 taaactctcatcaagagtctcatctatccgatttgggacttgggtttttcccaataca 6751619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 16564943 - 16564886
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| || || |||| |||||||| |||||| |||||| |||||||||||||    
T  16564943 tataaactcttattaagagtcttatctatccgatgtgggacttgggtttttcccaata 16564886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 16600719 - 16600776
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| || || |||| |||||||| |||||| |||||| |||||||||||||    
T  16600719 tataaactcttattaagagtcttatctatccgatgtgggacttgggtttttcccaata 16600776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 23821731 - 23821788
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||| ||||||| |||| ||| |||| ||||||| ||||| |||||||||||||    
T  23821731 tataaactgtcatcaaaagtcttatttatccgatgtgaaacttgggtttttcccaata 23821788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 40703914 - 40703971
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||||||||| ||||  ||||||| |||||| |||||||| |||||| ||||    
T  40703914 tataaactctcatcaagagtctcatctatccgatgtgggacttgagcttttccaaata 40703971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 2938289 - 2938249
Alignment:
Q  130 gtcttagaaatcgtagctgagtctaatacaatttcataaaa 170  Q
    |||||||||||||| | ||||| ||||||||||||||||||    
T  2938289 gtcttagaaatcgtggttgagtttaatacaatttcataaaa 2938249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 18107533 - 18107592
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||||||||| |||| |||||||| |||||| |||||| |||||||||||||||    
T  18107533 tataaactctcatcaagagtcttatctatccgatgtgggacttgggtttttcccaataca 18107592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 1893837 - 1893778
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| ||||||||  || |||||||||||||||||||||||||    
T  1893837 tataaactcttatcaagagtcgtatctatccaatatgagacttgagtttttcccaataca 1893778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 4563748 - 4563803
Alignment:
Q  186 taaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||| ||||| |||| |||||||| |||||||||| ||||||||||||||||    
T  4563748 taaactcttatcaaaagtcttatctatccgatgtgagacatgagtttttcccaata 4563803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 20720608 - 20720662
Alignment:
Q  187 aaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    ||||||| ||||| | || ||||||||||||||| ||||||||||||||||||||    
T  20720608 aaactcttatcaagaatcttatctatctgatgtgggacttgagtttttcccaata 20720662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 36878375 - 36878318
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| |||| ||||||||||||||| |||||  |||||||||||||    
T  36878375 tataaactcttatcaaaagtcttatctatctgatgtgggactttggtttttcccaata 36878318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 37781911 - 37781956
Alignment:
Q  196 tcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||    
T  37781911 tcaagagtcttatctatccgatgtgagacttgagtttttcccaata 37781956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 39268067 - 39268010
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| |||| |||||||| |||||| |||||| |||||||||||||    
T  39268067 tataaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaata 39268010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 37656799 - 37656846
Alignment:
Q  196 tcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||| |||| |||||||| |||||||||||||||||||| ||||||||    
T  37656799 tcaagagtcttatctatccgatgtgagacttgagttttttccaataca 37656846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 39268275 - 39268216
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||  |||||||| |||||| |||||| |||||||||||||||    
T  39268275 tataaactcttatcaagagttttatctatccgatgtgggacttgggtttttcccaataca 39268216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 43490311 - 43490370
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    ||||||||||  |||| |||| |||||||| |||||| |||||| |||||||||||||||    
T  43490311 tataaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaataca 43490370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 13413633 - 13413576
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    ||||||||||  |||| |||| ||||||| ||||||| |||||| |||||||||||||    
T  13413633 tataaactcttctcaagagtcttatctatttgatgtgggacttgggtttttcccaata 13413576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 38376780 - 38376723
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    ||||||||||  |||| |||| |||||||| |||||| |||||| |||||||||||||    
T  38376780 tataaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 38376723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 35656954 - 35656914
Alignment:
Q  201 agtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||||||  |||||||||||| |||||||||||||    
T  35656954 agtcctatctatccaatgtgagacttgggtttttcccaata 35656914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 50338437 - 50338495
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaatac 242  Q
    |||||||||| ||||| |||| |||||||||||| ||||||||||||||||| ||||||    
T  50338437 tataaactcttatcaagagtcttatctatctgatatgagacttgagtttttctcaatac 50338495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 27177664 - 27177607
Alignment:
Q  186 taaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||| ||||| |||| ||||||||| ||||||||||||||||||| ||||||||    
T  27177664 taaactctgatcaagagtcttatctatctcatgtgagacttgagttttttccaataca 27177607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 26915165 - 26915105
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaatacat 244  Q
    |||||||||| ||||| |||| |||||||||||| || ||||||||||||| |||||||||    
T  26915165 tataaactcttatcaagagtcttatctatctgatctgggacttgagttttttccaatacat 26915105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 35358520 - 35358568
Alignment:
Q  196 tcaatagtcctatctatctgatgtgagacttgagtttttcccaatacat 244  Q
    |||| |||| ||||||||||||||||||||||  |||||||||||||||    
T  35358520 tcaagagtcttatctatctgatgtgagacttggatttttcccaatacat 35358568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 27177461 - 27177402
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| || || ||||  ||||||||||||||||| |||||||||| ||||||||    
T  27177461 tataaactcttataaagagtctcatctatctgatgtgagatttgagttttttccaataca 27177402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 40230489 - 40230548
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||||||||| ||||  ||||||| ||||||  ||||| |||||||||||||||    
T  40230489 tataaactctcatcaagagtctcatctatccgatgtggaacttgggtttttcccaataca 40230548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 50692575 - 50692516
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| | |||||| |||||| |||||| |||||||||||||||    
T  50692575 tataaactcttatcaagagtcttgtctatccgatgtgggacttgggtttttcccaataca 50692516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 25399326 - 25399284
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagactt 226  Q
    |||||||||| ||||| ||||||||| ||||||||||||||||    
T  25399326 tataaactctgatcaagagtcctatcaatctgatgtgagactt 25399284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 32034141 - 32034083
Alignment:
Q  183 gtataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    ||||||||||| ||||| |||| |||||||  |||||| ||| ||||||||||||||||    
T  32034141 gtataaactcttatcaagagtcttatctattcgatgtgggacatgagtttttcccaata 32034083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 1715143 - 1715200
Alignment:
Q  188 aactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaatacatt 245  Q
    |||||| ||||| |||| ||||| |||||||||||||||  ||||||||||| |||||    
T  1715143 aactcttatcaagagtcttatctgtctgatgtgagacttcggtttttcccaacacatt 1715200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 29369839 - 29369790
Alignment:
Q  195 atcaatagtcctatctatctgatgtgagacttgagtttttcccaatacat 244  Q
    ||||| |||| |||||||| |||||| |||||| ||||||||||||||||    
T  29369839 atcaagagtcttatctatccgatgtgggacttgggtttttcccaatacat 29369790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 38422034 - 38421977
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| || ||||||| |||||||| |||||| |||||  |||||||||||||    
T  38422034 tataaactcttattaatagtcttatctatccgatgtgggacttaggtttttcccaata 38421977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 40926503 - 40926446
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| |||| |||||||| |||||| ||| || |||||||||||||    
T  40926503 tataaactcttatcaagagtcttatctatccgatgtgggacatgtgtttttcccaata 40926446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 51338508 - 51338553
Alignment:
Q  196 tcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||| |||| ||||||||||||||| |||||| |||||||||||||    
T  51338508 tcaagagtcttatctatctgatgtgggacttgggtttttcccaata 51338553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 53640239 - 53640284
Alignment:
Q  196 tcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||| |||| ||||||||||||||| |||||| |||||||||||||    
T  53640239 tcaagagtcttatctatctgatgtgggacttgggtttttcccaata 53640284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 25578736 - 25578795
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaatacat 244  Q
    |||||||||| ||||| |||| |||||||| |||||| ||| || ||||||||||||||||    
T  25578736 tataaactcttatcaa-agtcttatctatccgatgtgggacatgggtttttcccaatacat 25578795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 44367628 - 44367568
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaatacat 244  Q
    ||||||||||  |||| |||| |||||||||||| |||||| |  ||||||||||||||||    
T  44367628 tataaactcttctcaagagtcttatctatctgatatgagacatcggtttttcccaatacat 44367568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 33435728 - 33435671
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| |||  |||||||| |||||||||||||||||||||||||||    
T  33435728 tataaactcttatcaagagttttatctatccgatgtgagacttgagtttttcccaata 33435671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 30066029 - 30065981
Alignment:
Q  195 atcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  30066029 atcaagagtcttatctatctgatgtgggacttgagtttttcccaataca 30065981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 33435932 - 33435873
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| |||||||| |||||| |||||| |||||||||||||||    
T  33435932 tataaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaataca 33435873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 30176519 - 30176576
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||||||||| ||||   |||||| |||||| ||||||||||||||||||||    
T  30176519 tataaactctcatcaagagtctcgtctatccgatgtgggacttgagtttttcccaata 30176576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 43599360 - 43599303
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    ||||||||||  |||| |||| |||||||| |||||| ||||||||||||||||||||    
T  43599360 tataaactcttctcaagagtcttatctatccgatgtgggacttgagtttttcccaata 43599303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 15857216 - 15857169
Alignment:
Q  196 tcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||| |||| |||||||| |||||| ||||||||||||||||||||||    
T  15857216 tcaagagtcttatctatccgatgtgggacttgagtttttcccaataca 15857169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 43901072 - 43901131
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| |||||||| |||||| ||| || |||||||||||||||    
T  43901072 tataaactcttatcaagagtcttatctatccgatgtgggacatgggtttttcccaataca 43901131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 31711797 - 31711847
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagttttt 234  Q
    |||||||||| | ||| || | |||||||||||||||||||||||||||||    
T  31711797 tataaactcttagcaagagacttatctatctgatgtgagacttgagttttt 31711847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 12941619 - 12941562
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||||||||  ||||  ||||||||||||||  ||||| |||||||||||||    
T  12941619 tataaactctcatcatgagtctcatctatctgatgtggtacttgggtttttcccaata 12941562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 39705771 - 39705828
Alignment:
Q  186 taaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||| ||||| |||| ||| |||| |||||||||| ||| ||||||||||||||    
T  39705771 taaactcttatcaagagtcttatttatccgatgtgagacatgaatttttcccaataca 39705828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 30117491 - 30117543
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcc 236  Q
    |||||||||||||||| ||||  ||||||| |||||| |||||| ||||||||    
T  30117491 tataaactctcatcaagagtctcatctatccgatgtgggacttgggtttttcc 30117543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 42447300 - 42447252
Alignment:
Q  195 atcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    ||||| |||| ||||||| ||||||| ||||||||||||| ||||||||    
T  42447300 atcaagagtcgtatctatttgatgtgggacttgagttttttccaataca 42447252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 15293929 - 15293986
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||||||||| | ||  |||||||||||| ||||||||||||||||||||||    
T  15293929 tataaactctcatcaagaatctaatctatctgatgcgagacttgagtttttcccaata 15293986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 15102680 - 15102739
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||||||||| ||||  |||||| ||||||| |||||| |||||||||||||||    
T  15102680 tataaactctcatcaagagtctcatctatttgatgtgggacttgggtttttcccaataca 15102739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 15102807 - 15102865
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||||||||| ||||  |||||||||||||| |||||| |||||||||||||||    
T  15102807 tataaactctcatcaagagtctcatctatctgatgtg-gacttgggtttttcccaataca 15102865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 11316892 - 11316835
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||||||||| ||||  ||||||| ||||||  |||||||||||||||||||    
T  11316892 tataaactctcatcaagagtctcatctatccgatgtggaacttgagtttttcccaata 11316835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 13692245 - 13692282
Alignment:
Q  206 tatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||| |||||||||||||||||||||||||||||    
T  13692245 tatctatccgatgtgagacttgagtttttcccaataca 13692282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 2923011 - 2923070
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| |||||||| || ||| ||| ||||||||||||||||||    
T  2923011 tataaactcttatcaagagtcatatctatccgacgtgggacatgagtttttcccaataca 2923070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 11317097 - 11317038
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||||||||| |||   ||||||| |||||| |||||| |||||||||||||||    
T  11317097 tataaactctcatcaagagtttcatctatccgatgtgggacttgggtttttcccaataca 11317038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 26394600 - 26394542
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaatac 242  Q
    |||||||||| ||||| |||| |||||||| ||||||  || |||||||||||||||||    
T  26394600 tataaactcttatcaagagtcttatctatccgatgtggaacatgagtttttcccaatac 26394542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 12124760 - 12124809
Alignment:
Q  195 atcaatagtcctatctatctgatgtgagacttgagtttttcccaatacat 244  Q
    ||||||||||  |||||||||||||| |||||  ||||||||||||||||    
T  12124760 atcaatagtctcatctatctgatgtgggacttaggtttttcccaatacat 12124809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 3055832 - 3055776
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaat 240  Q
    |||||||||||||||| |||||||||||||  ||||| |||||| ||||||||||||    
T  3055832 tataaactctcatcaagagtcctatctatccaatgtgggacttgggtttttcccaat 3055776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 28246042 - 28245983
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||||||||| ||||  ||||||| |||||| |||||| |||||||||||||||    
T  28246042 tataaactctcatcaagagtctcatctatccgatgtgggacttgggtttttcccaataca 28245983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 26806560 - 26806503
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| ||||||||||||| ||| || |||||| |||||||||||||    
T  26806560 tataaactcttatcaagagtcctatctatccgatttgggacttgggtttttcccaata 26806503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 28497269 - 28497326
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| |||| |||||||| |||||| |||||| |||||||||||||    
T  28497269 tataaactcttatcaagagtcttatctatccgatgtgggacttgggtttttcccaata 28497326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 1923046 - 1923105
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    ||||||||||  |||| |||| ||||||||||||||| ||| || |||||||||||||||    
T  1923046 tataaactcttctcaagagtcttatctatctgatgtgggacatgggtttttcccaataca 1923105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 6218526 - 6218471
Alignment:
Q  129 tgtcttagaaatcgtagctgagtctaatacaatttcataaaaccggctagtgaggt 184  Q
    ||||||||||||||| | |||| |||| |||||| ||||||||||||| |||||||    
T  6218526 tgtcttagaaatcgtggttgagcctaacacaattccataaaaccggcttgtgaggt 6218471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 8305010 - 8305069
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||| |||||||| |||||  ||| ||||||||||||||||||    
T  8305010 tataaactcttatcaaaagtcttatctatccgatgtaggacatgagtttttcccaataca 8305069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 17076999 - 17077054
Alignment:
Q  188 aactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||||| ||||  ||||||| |||||| |||||| |||||||||||||||    
T  17076999 aactctcatcaagagtctcatctatccgatgtgggacttgggtttttcccaataca 17077054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 17077203 - 17077258
Alignment:
Q  188 aactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||||| ||||  ||||||| |||||| |||||| |||||||||||||||    
T  17077203 aactctcatcaagagtctcatctatccgatgtgggacttgggtttttcccaataca 17077258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 29113498 - 29113439
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    ||||||||||  |||| |||| ||||||||||||||| ||| || |||||||||||||||    
T  29113498 tataaactcttctcaagagtcttatctatctgatgtgggacatgggtttttcccaataca 29113439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 33629970 - 33629911
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||||||||| ||||  |||||||  ||||| |||||||||||||||| |||||    
T  33629970 tataaactctcatcaagagtctcatctatccaatgtgggacttgagtttttcccgataca 33629911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 39110944 - 39110897
Alignment:
Q  196 tcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||| |||| |||||||| |||||| ||||||||||||||||||||||    
T  39110944 tcaagagtcttatctatccgatgtgggacttgagtttttcccaataca 39110897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 52827287 - 52827346
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| |||||||||||||  |||||||||||| ||||||  |||||||    
T  52827287 tataaactcttatcaagagtcctatctatccaatgtgagacttgggtttttaacaataca 52827346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 53720726 - 53720785
Alignment:
Q  185 ataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaatacat 244  Q
    ||||||| | ||||| |||| |||||||| |||||| ||||| |||||||||||||||||    
T  53720726 ataaacttttatcaaaagtcttatctatccgatgtgggacttcagtttttcccaatacat 53720785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 3640255 - 3640197
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaatac 242  Q
    |||||||||| ||||| |||| |||||||| || ||| ||| |||||||||||||||||    
T  3640255 tataaactcttatcaagagtcttatctatccgacgtgggacatgagtttttcccaatac 3640197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 12879514 - 12879564
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagttttt 234  Q
    |||||| ||| ||||||| |||||| |||| ||||||||||||||||||||    
T  12879514 tataaaatcttatcaatattcctatttatccgatgtgagacttgagttttt 12879564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 41743227 - 41743265
Alignment:
Q  206 tatctatctgatgtgagacttgagtttttcccaatacat 244  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  41743227 tatctatccgatgtgagacttaagtttttcccaatacat 41743265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 3640503 - 3640446
Alignment:
Q  186 taaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||| ||||| |||| |||||||| |||||| ||  ||||||||||||||||||    
T  3640503 taaactcttatcaagagtcttatctatccgatgtgggagatgagtttttcccaataca 3640446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 5065890 - 5065845
Alignment:
Q  196 tcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||| |||| |||||||| |||||||||||||||||||| ||||||    
T  5065890 tcaagagtcttatctatccgatgtgagacttgagttttttccaata 5065845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 25753660 - 25753717
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| |||| | |||||| |||||| |||||| |||||||||||||    
T  25753660 tataaactcttatcaagagtcttgtctatccgatgtgggacttgggtttttcccaata 25753717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 43943722 - 43943665
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    ||||||||||  |||| |||| |||||||| |||||| |||||| |||||||||||||    
T  43943722 tataaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaata 43943665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 49380935 - 49380992
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    ||||||||||  |||| |||| |||||||| |||||||||||||  ||||||||||||    
T  49380935 tataaactcttctcaagagtcttatctatccgatgtgagacttggatttttcccaata 49380992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 3047514 - 3047474
Alignment:
Q  201 agtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||| ||| |||||||||| |||||||||||||||||||||    
T  3047514 agtcttatttatctgatgtaagacttgagtttttcccaata 3047474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 42845076 - 42845136
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaatacat 244  Q
    |||||||||| ||||| |||| |||||||||||||||  |||||||||||||| |||||||    
T  42845076 tataaactcttatcaagagtcttatctatctgatgtggtacttgagtttttcctaatacat 42845136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 49895179 - 49895145
Alignment:
Q  207 atctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||||||||||||||||||||||||||||    
T  49895179 atctatctgatgtgagacttgagtttttcccaata 49895145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 38871210 - 38871267
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||| | ||||| |||| ||||||||||||||| |||||| |||||||||||||    
T  38871210 tataaacttttatcaagagtcttatctatctgatgtgggacttgggtttttcccaata 38871267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 45395601 - 45395544
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||| ||||| |||| |||||||||||| || |||||| |||||||||||||    
T  45395601 tataaactcttatcaagagtcttatctatctgatatgggacttgggtttttcccaata 45395544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 52921522 - 52921579
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||||| ||| ||| ||||||||| |||||| |||||| |||||||||||||    
T  52921522 tataaactctcaccaagagtactatctatccgatgtgggacttgggtttttcccaata 52921579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 36332360 - 36332301
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||| ||||| ||| |||||||||  ||||| |||||| |||||||||||||||    
T  36332360 tataaactctaatcaagagttctatctatccaatgtgggacttgcgtttttcccaataca 36332301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 49828720 - 49828665
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaa 239  Q
    |||||| ||| ||||| ||||||||||||| |||||| |||||| |||||||||||    
T  49828720 tataaaatcttatcaagagtcctatctatcagatgtgggacttgggtttttcccaa 49828665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 39649139 - 39649197
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaatac 242  Q
    ||||||||||  |||| |||| |||||||| |||||| |||||| ||||||||||||||    
T  39649139 tataaactcttctcaagagtcttatctatccgatgtgggacttgggtttttcccaatac 39649197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 1233975 - 1233918
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    |||||||||||||||| ||||  ||||||| |||||| |||||| |||||| ||||||    
T  1233975 tataaactctcatcaagagtctcatctatccgatgtgggacttgggtttttaccaata 1233918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 13959451 - 13959394
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    ||||||||||  |||| |||| |||||||| ||||||||||||| ||| |||||||||    
T  13959451 tataaactcttctcaagagtcttatctatccgatgtgagacttgcgttattcccaata 13959394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 40315913 - 40315962
Alignment:
Q  184 tataaactctcatcaatagtcctatctatctgatgtgagacttgagtttt 233  Q
    |||||||| ||||||| |||||| ||||||| || |||||||||||||||    
T  40315913 tataaactttcatcaagagtcctttctatcttatatgagacttgagtttt 40315962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 5222742 - 5222686
Alignment:
Q  185 ataaactctcatcaatagtcctatctatctgatgtgagacttgagtttttcccaata 241  Q
    ||||||||| ||||| |||| |||||||| |||||| |||||  |||||||||||||    
T  5222742 ataaactcttatcaagagtcttatctatcagatgtgggacttaggtttttcccaata 5222686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 22892499 - 22892535
Alignment:
Q  207 atctatctgatgtgagacttgagtttttcccaataca 243  Q
    |||||||||||||| |||||| |||||||||||||||    
T  22892499 atctatctgatgtgggacttgggtttttcccaataca 22892535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 47377873 - 47377825
Alignment:
Q  195 atcaatagtcctatctatctgatgtgagacttgagtttttcccaataca 243  Q
    ||||| |||| |||||||| |||||| ||| ||||||||||||||||||    
T  47377873 atcaagagtcttatctatccgatgtgggacatgagtttttcccaataca 47377825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1138 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1138
Description:

Target: scaffold1138; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 1926 - 1978
Alignment:
Q  182 ggtataaactctcatcaatagtcctatctatctgatgtgagacttgagttttt 234  Q
    |||||||||||| ||||| |||| |||||||| ||||||||||||| ||||||    
T  1926 ggtataaactcttatcaagagtcttatctatccgatgtgagacttgggttttt 1978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University