View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5279-Insertion-4 (Length: 250)
Name: NF5279-Insertion-4
Description: NF5279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5279-Insertion-4 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 16845722 - 16845977
Alignment:
| Q |
8 |
ataccaacaccttctctttactgtgtttagctaaatatacagtcaccaaaaagaaaccatttccatggcgttcaagatcaagaacgtacattctctactc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16845722 |
ataccaacaccttctctttactgtgtttagctaaatatacagtcaaccaaaacaaaacatatccatggcgttcaagatcaagaacgtacattctttactc |
16845821 |
T |
|
| Q |
108 |
atcttcatcttgatcttca------------ctatatcacaaactaccgcattaat-cactacagaaacttccacaacaagcaacacattagggcactgg |
194 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16845822 |
atcttcatcttcatcttcatcttcatcttcactatatcacaaacaaccgcattaattcactacagaaacttccacaacaagcaacacattagggcactgg |
16845921 |
T |
|
| Q |
195 |
atccagcttcaaaaaaccacaggcatctcagccatgcacatgcaagtaatgaaaga |
250 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16845922 |
atccagcttcaaaattccataggcatctcagccatgcacatgcaagtaatgaaaga |
16845977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University