View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5279_high_1_N (Length: 524)
Name: NF5279_high_1_N
Description: NF5279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5279_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 11749097 - 11748978
Alignment:
| Q |
19 |
gtttggcttaaagactgctcctggttgacacaggaagaattcactgcatattttggagtgttggactcttccacattagaggtatttccatgaaattttt |
118 |
Q |
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| T |
11749097 |
gtttggcttaaagactgctcctggttgacataggaagaattcactgcatattttggagtgttggacacttccacggtagaggtatgtccatgaaattttt |
11748998 |
T |
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| Q |
119 |
attgctatggtggtagtaaa |
138 |
Q |
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| T |
11748997 |
attgctatggtggtagtaaa |
11748978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 393 - 505
Target Start/End: Complemental strand, 52010960 - 52010848
Alignment:
| Q |
393 |
gaataggtgctacaacttgaccaatgtggacgagttataactgacgatacgttactttctacattggcaaagtcagcaagctgcttgtctaaattgatca |
492 |
Q |
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| T |
52010960 |
gaataggtgctgcaacttgaccagtgtggacgagttataacagaatatacattactttctacattggcaaagtcaccaagctgcttgtctagattgatta |
52010861 |
T |
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| Q |
493 |
gtctatctctcac |
505 |
Q |
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| T |
52010860 |
gtctatccctcac |
52010848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 356 - 505
Target Start/End: Complemental strand, 51998433 - 51998284
Alignment:
| Q |
356 |
tacaagatcttaatacatgtttgtacannnnnnngtcgaataggtgctacaacttgaccaatgtggacgagttataactgacgatacgttactttctaca |
455 |
Q |
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| T |
51998433 |
tacaagatcttaattcatgtttatacatttatttgtggaataggttctgcaacttcagcaatgtggacgaattataactgaatatacattaccttgtaca |
51998334 |
T |
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| Q |
456 |
ttggcaaagtcagcaagctgcttgtctaaattgatcagtctatctctcac |
505 |
Q |
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| T |
51998333 |
ttggcaaagtcaccaaactgcttgtctagattgattagtctatctctcac |
51998284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 52011284 - 52011204
Alignment:
| Q |
23 |
ggcttaaagactgctcctggttgacacaggaagaattcactgcatattttggagtgttggactcttccacattagaggtat |
103 |
Q |
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| T |
52011284 |
ggcttaaagattgctcctggttgacagaggaagaattcactaaatgttttggaatgttggacacttccatattagaggtat |
52011204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 430
Target Start/End: Complemental strand, 52000945 - 52000909
Alignment:
| Q |
394 |
aataggtgctacaacttgaccaatgtggacgagttat |
430 |
Q |
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| T |
52000945 |
aataggtgctacaacttgaccaatgtggacgagttat |
52000909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 51988214 - 51988294
Alignment:
| Q |
23 |
ggcttaaagactgctcctggttgacacaggaagaattcactgcatattttggagtgttggactcttccacattagaggtat |
103 |
Q |
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|||||||||| |||| |||||||||| |||||||||| | |||||||||| |||||| |||||| ||||||||||| |
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| T |
51988214 |
ggcttaaagattgcttctggttgacagaggaagaatttataaaatattttggaacattggacacttccatattagaggtat |
51988294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 52001419 - 52001339
Alignment:
| Q |
23 |
ggcttaaagactgctcctggttgacacaggaagaattcactgcatattttggagtgttggactcttccacattagaggtat |
103 |
Q |
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| T |
52001419 |
ggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttggaaagttggacaattccatattagaggtat |
52001339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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