View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5279_high_2 (Length: 425)
Name: NF5279_high_2
Description: NF5279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5279_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 34899975 - 34899746
Alignment:
| Q |
1 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
100 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
34899876 |
T |
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| Q |
101 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccactctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt |
200 |
Q |
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| T |
34899875 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt |
34899776 |
T |
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| Q |
201 |
atgtgaatttgtgcagatgatatcactgac |
230 |
Q |
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| T |
34899775 |
atgtgaatttgtgcagatgatatcactgac |
34899746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 304 - 422
Target Start/End: Original strand, 52010848 - 52010966
Alignment:
| Q |
304 |
gtgagagatagactgatcaatttagacaagcagcttgctgactttgccaatgtagaaagtaacgtatcgtcagttataactcgtccacattggtcaagtt |
403 |
Q |
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| T |
52010848 |
gtgagggatagactaatcaatctagacaagcagcttggtgactttgccaatgtagaaagtaatgtatattctgttataactcgtccacactggtcaagtt |
52010947 |
T |
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| Q |
404 |
gtagcacctattcgacaaa |
422 |
Q |
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| T |
52010948 |
gcagcacctattccacaaa |
52010966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 304 - 422
Target Start/End: Original strand, 51998284 - 51998402
Alignment:
| Q |
304 |
gtgagagatagactgatcaatttagacaagcagcttgctgactttgccaatgtagaaagtaacgtatcgtcagttataactcgtccacattggtcaagtt |
403 |
Q |
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|||||||||||||| |||||| ||||||||||| ||| |||||||||||||||| || |||| |||| |||||||||| |||||||||||| | ||||| |
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| T |
51998284 |
gtgagagatagactaatcaatctagacaagcagtttggtgactttgccaatgtacaaggtaatgtatattcagttataattcgtccacattgctgaagtt |
51998383 |
T |
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| Q |
404 |
gtagcacctattcgacaaa |
422 |
Q |
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| || |||||||| ||||| |
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| T |
51998384 |
gcagaacctattccacaaa |
51998402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 52000909 - 52000945
Alignment:
| Q |
379 |
ataactcgtccacattggtcaagttgtagcacctatt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
52000909 |
ataactcgtccacattggtcaagttgtagcacctatt |
52000945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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