View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5279_high_3 (Length: 380)
Name: NF5279_high_3
Description: NF5279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5279_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 22 - 370
Target Start/End: Original strand, 48083553 - 48083901
Alignment:
| Q |
22 |
caatggctacttctttggtgattgctttttgtgtaatgataagctttgttggttgtgcttatgctcaaccaagagctttctttgtttttggagattctct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48083553 |
caatggctacttctttggtgattgctttttgtgtaatgataagctttgttggttgtgcttatgctcaaccaagagctttctttgtttttggagattctct |
48083652 |
T |
|
| Q |
122 |
agtggacagtggtaacaatgactttcttgctaccacggcccgagccgacaattatccatatggcattgattatccaagtcacaggcctaccggacgtttc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
48083653 |
agtggacagtggtaacaatgactttcttgctaccacggcccgagccgacaattatccatatggcattgattatccaagtcacaggcctacagggcgtttc |
48083752 |
T |
|
| Q |
222 |
tctaatggctacaatatccctgacctaatcagtaagatcgagtttaccattgctactnnnnnnnncttgtatcgactaggaaaatttggaaagagaaaac |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
48083753 |
tctaatggctacaatatccctgacctaattagtaagatcgagtttaccattgctactaaaaaaaacttgtatcggctagggaaatttggaaagagaaaac |
48083852 |
T |
|
| Q |
322 |
ataaaatatttctctaaattagtcaccaaatttagtgacaagagaatta |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48083853 |
ataaaatatttctctaaattagtcaccaaatttagtgacaagagaatta |
48083901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 48091513 - 48091587
Alignment:
| Q |
180 |
tatggcattgattatccaagtcacaggcctaccggacgtttctctaatggctacaatatccctgacctaatcagt |
254 |
Q |
| |
|
||||||||||||||||||| || || || |||||||||||||||||||||||||| || |||||| | |||||| |
|
|
| T |
48091513 |
tatggcattgattatccaactcgtagacccaccggacgtttctctaatggctacaacattcctgacttcatcagt |
48091587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 48066151 - 48066212
Alignment:
| Q |
98 |
tttctttgtttttggagattctcta--gtggacagtggtaacaatgactttcttgctaccac |
157 |
Q |
| |
|
|||||| ||||| ||||||||| || |||||||||||||||||||| ||| |||||||||| |
|
|
| T |
48066151 |
tttcttcgttttgggagattctttatagtggacagtggtaacaatgattttgttgctaccac |
48066212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University