View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5279_high_5 (Length: 345)
Name: NF5279_high_5
Description: NF5279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5279_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 24 - 338
Target Start/End: Original strand, 52969139 - 52969455
Alignment:
| Q |
24 |
cttctttcttataagtccttactcgtctct--atcaacaattgattgaatttctcgatcaatcgttgtgttttttgtttgtttatcttgttactttagaa |
121 |
Q |
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| T |
52969139 |
cttctttcttataagtccttactcggctctttatcaacaattgattgaatttctcgatcaatcgttgtgttttttgtttgtttatcttgttactttagaa |
52969238 |
T |
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| Q |
122 |
ccaataagagctgataagtcaactttggtttgatttgattccaaacaagaggaaccgttttggataaggagagcagcatgggaaaaagttcaaagccacg |
221 |
Q |
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| T |
52969239 |
ccaataagagctgataagtcaactttggtttgatttgattccaaacaagaggaaccattttggataaggagagcagcatgggaaaaagttcaaagccacg |
52969338 |
T |
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| Q |
222 |
tggggtcaatgtgtacttttttgtaacaattatttagggaaaaaactattagtcaatcaccttttaacacgtgttaaaagtctaagtatttcaaccactc |
321 |
Q |
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| T |
52969339 |
tggggtcaatgtgtacttttttgcaacaattatttagggaaaaaactattagtcaatcaccttttaacacgtgttaaaagtctaagtattccaaccactc |
52969438 |
T |
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| Q |
322 |
acaatcaatctctgctt |
338 |
Q |
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||||||||||| ||||| |
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| T |
52969439 |
acaatcaatctgtgctt |
52969455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 52964136 - 52964234
Alignment:
| Q |
135 |
ataagtcaactttggtttgatttgattccaaacaagaggaaccgttttggataaggagagcagcatgggaaaaagttcaaagccacgtggggtcaatgtg |
234 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| || ||||||||||||||||| |
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| T |
52964136 |
ataagtcaactttggtttgatttgattccaaacaagaagaacgattttggataag--gagcagcatgggaaaaagttcatag-cacgtggggtcaatgtg |
52964232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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