View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5279_high_7 (Length: 321)
Name: NF5279_high_7
Description: NF5279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5279_high_7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 443122 - 442818
Alignment:
| Q |
17 |
gagagtgacaaaaacaaggaactaccgaaggcagaagcttcatttgagaataataataatgaatgaattctacacagatggcagaaacatcctgctatga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
443122 |
gagagtgacaaaaacaaggaactaccgaaggcagaagcttcatttgagaataataataatgaatgaattctacacagatggcagaaacatcctgctatga |
443023 |
T |
|
| Q |
117 |
attctacacagaagaagttccaataataaaagcaaatgaagttctacagtttcatgtgttccttcatcttcatcaaccacaacataaaattctccctgat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
443022 |
attctacacagaagaagttccaataataaaagcaaatgaagttctatagtttcatgtgttccttcatcttcatcaaccacaacataaaattctccctgat |
442923 |
T |
|
| Q |
217 |
tttgattggtctcataattatagtactaataataataacaaataatattggtgacagaaagctagtgtttgatgttcctcataatcagtatccttctcta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
442922 |
tttgattggtctcataattatagtactaataataataacaaataatattggtgacagaaagctagtgtttgatgttcctcataatcagtatccttctcta |
442823 |
T |
|
| Q |
317 |
aaatt |
321 |
Q |
| |
|
||||| |
|
|
| T |
442822 |
aaatt |
442818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University