View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5279_high_8 (Length: 310)

Name: NF5279_high_8
Description: NF5279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5279_high_8
NF5279_high_8
[»] chr1 (1 HSPs)
chr1 (1-297)||(46373235-46373531)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 46373235 - 46373531
Alignment:
Q  1 gagactatggatttgaatttgcaatcttaaattcacacattcatgcagttgaacattgatggtcgttggataaagatcgggcggtgtnnnnnnncaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  46373235 gagactatggatttgaatttgcaatcttaaattcacacattcatgcagttgaacattgatggtcgttggataaagatcgggcggtgtaaaaaaacaaaca 46373334  T
Q  101 aatttagaannnnnnnaaactctaagataccaagcttgaaatttggaccgtccaatcttgattcaatgactactatgtgctaattgcgcgagatttgtga 200  Q
    |||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46373335 aatttagaatttttttaaactctaaaataccaagcttgaaatttggaccgtccaatcttgattcaatgactactatgtgctaattgcgcgagatttgtga 46373434  T
Q  201 ctgcggcaattcagagccatgcattgattgataacaaaaataagctactcaataccttttcaataaatgttattgtattttttatttcttttgatct 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  46373435 ctgcggcaattcagagccatgcattgattgataacaaaaataagctactcagtaccttttcaataaatgttattatattttttatttcttttgatct 46373531  T

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