View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5279_low_1 (Length: 254)
Name: NF5279_low_1
Description: NF5279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5279_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 8823668 - 8823446
Alignment:
| Q |
20 |
aaacccaaagtgataacatatttaaatcaaacactttgaattgaataggtagagtaataatgggatcattatccaaattcaaatattttatataaggaag |
119 |
Q |
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| T |
8823668 |
aaacccaaagtgataacatatttaaatcaaacactttgaattgaataggtagagtaataatgggatcattatccaaattcaaatattttatataaggaag |
8823569 |
T |
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| Q |
120 |
ctcacatgcaaaacaggaacattttcagtacaaagattaattaattaacccatgcacaattaaacataaattctttccttcaaagccatattatgatgcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8823568 |
ctcacatgcaaaacaggaacattttcagtacaaagattaa----ttaacccatgcacaattaaacataaattctttccttcaaagccatattatgatgcc |
8823473 |
T |
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| Q |
220 |
atgcacgtgcattcaattgcctatgct |
246 |
Q |
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| T |
8823472 |
atgcacgtgcattcaattgcctatgct |
8823446 |
T |
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