View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5280_high_1 (Length: 527)
Name: NF5280_high_1
Description: NF5280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5280_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 24 - 511
Target Start/End: Original strand, 32542719 - 32543206
Alignment:
| Q |
24 |
cccatgtacagcaatggtggacgtcattgtttcgtcattgtacgaactggttgtagcttcattagaaacgaaactttggggctccaaaatatcctgcaaa |
123 |
Q |
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| T |
32542719 |
cccatgtacagcaatggtggacgtcattgtttcatcattgtacgaactggttgtagcttcattagaaacgaagctttggggctccaaaatatcctgcaaa |
32542818 |
T |
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| Q |
124 |
ttcatgaattgtcgtaatttagtgaagaacatcaaaagaaagaaaactttcacaattttcatttcagctataaaaggcacttacatgtttatgctggtaa |
223 |
Q |
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| T |
32542819 |
ttcatgaattgtcgtaatttagtgaagaacatcaaaagaaagaaaactttcacaattttcatttcagctataaaaggcacttacatgtttatgctggtaa |
32542918 |
T |
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| Q |
224 |
ttgtgaaacaaatccgcttctgaaatgagattgctcaatccgctagcaagtttaacaacttgagaagcccctagctgttctgagatagtatgctgcttta |
323 |
Q |
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| T |
32542919 |
ttgtgaaacaaatccgcttctgaaatgagattgctcaatccgctagcaagtttaacaacttgagaagcacctagctgttctgagatagtatgctgcttta |
32543018 |
T |
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| Q |
324 |
aatccatttgtcggagttttttccacaaattctgtaccatatctgtttccagtgatggactggactcgacaaatgttgactttagtttgaaatccacacg |
423 |
Q |
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| T |
32543019 |
aatccatttgtcggagttttttccacaaattctgtaccatatctgtttccagtgatggactggactcgacaaatgttgacttcagtttgaaatccacacg |
32543118 |
T |
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| Q |
424 |
actgcactcatccatcaccttgataattgtagtttctggaatttcagtatccataaacatatctgaattttctgacaattttgataag |
511 |
Q |
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| T |
32543119 |
actgcactcatccatcaccttgataattgtagtttctggaatttcagtatccataagcatatctgaattttctgacaattttgataag |
32543206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 44200374 - 44200437
Alignment:
| Q |
269 |
gcaagtttaacaacttgagaagcccctagctgttctgagatagtatgctgctttaaatccattt |
332 |
Q |
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| T |
44200374 |
gcaagtttaacaacctgagaatcacctagctattctgagatagtatgctaatttaaattcattt |
44200437 |
T |
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