View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5280_high_15 (Length: 325)
Name: NF5280_high_15
Description: NF5280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5280_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 23369098 - 23368798
Alignment:
| Q |
6 |
catcatcatatatatctactttcaaggcatccaaattgcaattttcttgattaacccctgttaggcagtgtattaatttaactattatttgtgtaatata |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23369098 |
catcatcatatatatctactttgaaggcatccaaattacaattttcttaattaacacatgttaggcaatgtattaatttaactattatttgtgtaatata |
23368999 |
T |
|
| Q |
106 |
gaaagttgaatattcaacaattaccattggctgatgagtttgatgatggaccaccttcttcaaatactgaatcaaaattaagtcttgtaataggaagctc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23368998 |
gaaagttgaatattcaacaattaccattggctgatgagtttgatgatggaccaccttcttcaaataatgaatcaaaattaagtcttgtaataggaagctc |
23368899 |
T |
|
| Q |
206 |
tttaaatctccttctcttttgaactctagttttttgtccctttttggttgtatttagaacttgcggcactacatattgcatcaatgtatgttgatgatgt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23368898 |
tttaaatctccttctcttttgaactctagttttttgtccctttttggttgtatttagaactagcggcactacatattgcatcagtgtatgttgatgatgt |
23368799 |
T |
|
| Q |
306 |
c |
306 |
Q |
| |
|
| |
|
|
| T |
23368798 |
c |
23368798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University