View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5280_high_19 (Length: 301)
Name: NF5280_high_19
Description: NF5280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5280_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 48 - 291
Target Start/End: Original strand, 33400798 - 33401041
Alignment:
| Q |
48 |
agtaacaataaattgaagtggctctatcatgttttgtttttgtgaaatttcataattttgctgatatcaacagaatagtaatgaaattaggaaagatgaa |
147 |
Q |
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| T |
33400798 |
agtaacaataaattgaagtggctttatcatgttttgtttttgtgaaatttcataattttgctcatatcaacataatagtaatgaaattaggaaagaagaa |
33400897 |
T |
|
| Q |
148 |
taagtaattagcaaagagcaattttcaaaccaaccttcaatttcgtttctctttctccccttttggtgttcaataaaaaatcaaagaaaggagaactaga |
247 |
Q |
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| T |
33400898 |
taagtaattagtaaagagcaattttgaaaccaaacttcaattgcgtttctctttctccccttttggtgttcaataaaaaatcaaagaaaggagaactaga |
33400997 |
T |
|
| Q |
248 |
ggatatatggaggtttgattggtggtggtgacgggtgtctgtgg |
291 |
Q |
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| T |
33400998 |
ggatatatggaggtttgattggtggtggtgacgggtgtgtgtgg |
33401041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 35 - 267
Target Start/End: Original strand, 33046029 - 33046261
Alignment:
| Q |
35 |
taagaataagaaaagtaacaataaattgaagtggctctatcatgttttgtttttgtgaaatttcataattttgctgatatcaacagaatagtaatgaaat |
134 |
Q |
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| T |
33046029 |
taagaataagaaaagtaacaataaattgaagtggctctatcatgttttgtttttgtgaaatttcataattttgctcatatcaacggaatagtaatgaaat |
33046128 |
T |
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| Q |
135 |
taggaaagatgaataagtaattagcaaagagcaattttcaaaccaaccttcaatttcgtttctctttctccccttttggtgttcaataaaaaatcaaaga |
234 |
Q |
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| T |
33046129 |
taggaaagaagaataagtaattagcacagtgcaattttcaaaccaaccttcaattttgtttctctttctccccttttggtgttcaataaaaaatcaaaga |
33046228 |
T |
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| Q |
235 |
aaggagaactagaggatatatggaggtttgatt |
267 |
Q |
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| T |
33046229 |
aagaagaactagaggatatatggaggtttgatt |
33046261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 66 - 291
Target Start/End: Complemental strand, 49006570 - 49006323
Alignment:
| Q |
66 |
tggctctatcatgttttgtttttgtgaaatttcataattttgctgatatcaacagaatagtaatgaaattaggaaagatgaataagtaattagcaaa--- |
162 |
Q |
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| T |
49006570 |
tggctctatcatgttttgtttgggtgaaatttcacaattttgctcatatcaacagaatagtaatgaaattaggaaagaagaataagtgattagcaaatta |
49006471 |
T |
|
| Q |
163 |
----------------gagcaattttcaaaccaaccttcaatttcgttt-ctctttctccccttttggtgttcaataaaaaa--tcaaagaaaggagaac |
243 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||| ||| || |||||||||||||| |||||||||||||||| |
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| T |
49006470 |
gataagaagaaagaaggagcaattttcaaaccaaccttcaatttcattttctctttctcagcttctgttgttcaataaaaaaaatcaaagaaaggagaac |
49006371 |
T |
|
| Q |
244 |
tagaggatatatggaggtttgattggtggtggtgacgggtgtctgtgg |
291 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
49006370 |
tacaggatatatggaggtttgattggtggtggtgactggtgtgtgtgg |
49006323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 7909861 - 7909782
Alignment:
| Q |
62 |
gaagtggctctatcatgttttgtttttgtgaaatttcataattttgctgatatcaacagaatagtaatgaaattaggaaa |
141 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |||| |
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| T |
7909861 |
gaagtggctctatcatgttttgtttaggtgaaatttcacaattttgctcatatcaacagaatagtaatgaaattaagaaa |
7909782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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