View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5280_high_1_N (Length: 796)
Name: NF5280_high_1_N
Description: NF5280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5280_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 8e-51; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 1042351 - 1042218
Alignment:
| Q |
1 |
caatgttcataattttttcctcgtcgagatgctgcaacaaatatttcagaatataacttattaatatcaacattttccacacaggtccaaatcacaaaac |
100 |
Q |
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| T |
1042351 |
caatgttcataattctttcctcgtcaagatgctgcatcaaatatttcagaatataacttattaatatcaa-attttccacacaggtccaaatcaccaaac |
1042253 |
T |
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| Q |
101 |
aatgctaacgatcttactcttatgaataaaacttt |
135 |
Q |
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| T |
1042252 |
aatgttaacaatcttactcttatgaataaaacttt |
1042218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 1041924 - 1041828
Alignment:
| Q |
319 |
tgatctattttgctatcgtattcatttctacctccacgactctaaaactg--atgctattatagatttatataagatctattgagtcacccattact |
413 |
Q |
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| T |
1041924 |
tgatctattttgctatcttattcatttctacctcaacgactctaaaactgacatgctattgcaaaattatctaagatccattgggtcacccattact |
1041828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 457 - 543
Target Start/End: Complemental strand, 1041758 - 1041673
Alignment:
| Q |
457 |
aaatagtgtttataagtaatagacatttctcaccttaaaaatatatcttgcttggttggcccaacccaaattttaacatggtaaaca |
543 |
Q |
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| T |
1041758 |
aaatagtgtttataagtaatagacatttctcagattaaaatta-attttgtgtgtttggcccaacccaacttttaagatggtaaaca |
1041673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 266 - 329
Target Start/End: Complemental strand, 1042209 - 1042146
Alignment:
| Q |
266 |
tatagatacgcttgattaaaaattcaaagataacctttctcatttatattacatgatctatttt |
329 |
Q |
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| T |
1042209 |
tatatatacacttgattaatcattcaaagataacctttctcatttctactacatgttctatttt |
1042146 |
T |
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