View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5280_high_3 (Length: 464)
Name: NF5280_high_3
Description: NF5280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5280_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 22 - 440
Target Start/End: Original strand, 20670538 - 20670955
Alignment:
| Q |
22 |
acatcatcaactccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcgtaaacaaatgggtaagcatct |
121 |
Q |
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| T |
20670538 |
acatcatcaactccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcataaacaaatgggtaagcatct |
20670637 |
T |
|
| Q |
122 |
tatcaatctcacatccatcacttagcctaacactcttcatccctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatat |
221 |
Q |
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| T |
20670638 |
tatcaatctcccatccatcacttagcctaacactcttcattcctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatat |
20670737 |
T |
|
| Q |
222 |
catccctcaacgtctcgtctacactgacctcctcctcctccctcgttactctcgtatacctactcttctccccggtaaaaccatcaccgttaccgataac |
321 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20670738 |
catccctcaacgtctcgtctacgctgacctcctcctcctccctcgttactctcgtatccctactcttctccccggtaaaaccatcaccgttaccgataac |
20670837 |
T |
|
| Q |
322 |
ttccccggtaatttcacccttgatgatgtccatctcattgaacctgatacgttataatacttcttctcttgctgttcatggtgttcagaggcttcttgat |
421 |
Q |
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|||||||||||||||||||||||||||||| |||| | |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20670838 |
ttccccggtaatttcacccttgatgatgtcttgctcactcaacctgat-ctttataatacttcttctcttgctgttcatggtgttcagaggcttcttgat |
20670936 |
T |
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| Q |
422 |
tactcaacttttggtgatg |
440 |
Q |
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||||||||||||||||||| |
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| T |
20670937 |
tactcaacttttggtgatg |
20670955 |
T |
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