View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5280_high_4 (Length: 421)
Name: NF5280_high_4
Description: NF5280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5280_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 30 - 417
Target Start/End: Original strand, 39887589 - 39887976
Alignment:
| Q |
30 |
gtttccaggtataacacatcctggtataattggaactgcgccatcaatggaactcctaaacatatggagtgaaagggaaagagatgttgcagaaaatggt |
129 |
Q |
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| T |
39887589 |
gtttccaggtataacacatcctggtataattggaactgcgccatcaatggaactcctaaacatatggaatgaaagggaaagagatgttgcagaaaatggt |
39887688 |
T |
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| Q |
130 |
attcattctctcaaactatgtgaggttttgcatagcagacccttggcaaacttaccaacagaaaaaagttgtctccttggaaaggtaatgtgaataaata |
229 |
Q |
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| T |
39887689 |
attcattctctcaaactatgtgaggttttgcatagcagacccttggcaaacttaccaacagaaaaaagttgtctccttggaaaggtaatgtgaataaata |
39887788 |
T |
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| Q |
230 |
aatatcgaatggtgtccgtttggacattagcaatgtgacatgtccgtatttgtgtctatgtcagagtttatgcttcgtagcttatacaagttacatagct |
329 |
Q |
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|||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39887789 |
aatatctaatggtgcccgtttggacattagcaatgtgacgtgtccgtatttgtgtctatgtcagagtttatgcttcatagcttatacaagttacatagct |
39887888 |
T |
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| Q |
330 |
gaccatattatattggaccattgttttgttggcttgttaagaaatcaaacaagatttcatttcttgaaactcttgtagattgaaaaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39887889 |
gaccatattatattggaccattgttttgttggcttgttaagaaatcaaacaagatttcatttcttgaaactcttgtagattgaaaaag |
39887976 |
T |
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