View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5280_high_6 (Length: 377)
Name: NF5280_high_6
Description: NF5280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5280_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 80 - 339
Target Start/End: Original strand, 37642663 - 37642938
Alignment:
| Q |
80 |
ttcttaatttaaaggtgccaaaaagcttatgtcatactttatgtgcccaaccgatgaccgaaagaaacaccatgagcgcggt----------------tt |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
37642663 |
ttcttaatttaaaggtgccaaaaagcttatgtcatactttatgtgcccaaccgatgagcgaaagaaacaccatgagcgcggtagaaggctatgttggttt |
37642762 |
T |
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| Q |
164 |
agctaataattgtgtgtcactatgatagaatattagaaagcattaaaatcataaaactgatttaacctaatgtggcttatccatgaactttggtgcatta |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37642763 |
agctaataattgtgtgtcactatgatagaatattagaaagcattaaaatcataaaactgatttaacctaatgcggcttatccatgaactttggtgcattg |
37642862 |
T |
|
| Q |
264 |
aagtttgatacacggtcttttattctctagagttagaaataaatacgaatcaaaacctatagtacattacactgac |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37642863 |
gagtttgatacacggtcttttattctctagagttagaaataaatacgaatcaaaacctatagtacattacattgac |
37642938 |
T |
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