View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5280_low_2 (Length: 256)

Name: NF5280_low_2
Description: NF5280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5280_low_2
NF5280_low_2
[»] chr5 (12 HSPs)
chr5 (10-240)||(37028985-37029214)
chr5 (51-177)||(524843-524965)
chr5 (51-120)||(931380-931449)
chr5 (76-118)||(13423866-13423909)
chr5 (76-120)||(43511618-43511663)
chr5 (76-119)||(138145-138189)
chr5 (76-132)||(19099333-19099392)
chr5 (76-119)||(5829386-5829428)
chr5 (76-134)||(42291900-42291961)
chr5 (76-120)||(17513955-17514000)
chr5 (76-120)||(20975985-20976030)
chr5 (85-118)||(29156192-29156225)
[»] chr6 (11 HSPs)
chr6 (61-209)||(31243956-31244107)
chr6 (61-209)||(31234819-31234971)
chr6 (61-124)||(1327589-1327653)
chr6 (76-119)||(3748587-3748631)
chr6 (51-131)||(32056050-32056129)
chr6 (76-118)||(57690-57733)
chr6 (76-118)||(628114-628157)
chr6 (76-118)||(2618357-2618400)
chr6 (76-118)||(12614735-12614778)
chr6 (65-173)||(15035788-15035894)
chr6 (76-120)||(31861001-31861046)
[»] chr3 (15 HSPs)
chr3 (51-238)||(4207348-4207537)
chr3 (51-177)||(21660441-21660564)
chr3 (51-237)||(35202712-35202907)
chr3 (76-119)||(27303188-27303232)
chr3 (76-119)||(7767064-7767108)
chr3 (76-118)||(13401461-13401504)
chr3 (76-118)||(29387773-29387816)
chr3 (76-118)||(51939575-51939618)
chr3 (85-119)||(42009291-42009325)
chr3 (85-119)||(46904743-46904777)
chr3 (76-120)||(1649850-1649895)
chr3 (89-118)||(23164605-23164634)
chr3 (76-132)||(28132754-28132813)
chr3 (76-119)||(36538205-36538249)
chr3 (76-119)||(50677333-50677377)
[»] chr2 (13 HSPs)
chr2 (51-212)||(12072403-12072568)
chr2 (76-134)||(18916073-18916134)
chr2 (85-132)||(33280311-33280358)
chr2 (76-121)||(38985728-38985774)
chr2 (76-173)||(36059924-36060020)
chr2 (76-119)||(38599403-38599447)
chr2 (76-119)||(39081399-39081443)
chr2 (78-120)||(15457500-15457543)
chr2 (76-118)||(18172959-18173002)
chr2 (76-118)||(19367438-19367481)
chr2 (85-120)||(21747259-21747294)
chr2 (76-118)||(45618979-45619021)
chr2 (76-119)||(1418910-1418954)
[»] chr1 (11 HSPs)
chr1 (51-118)||(32810345-32810413)
chr1 (76-120)||(12971406-12971451)
chr1 (76-120)||(30004926-30004971)
chr1 (76-119)||(15441291-15441335)
chr1 (85-120)||(5560483-5560518)
chr1 (76-118)||(12884156-12884199)
chr1 (76-118)||(18127956-18127999)
chr1 (76-118)||(28885690-28885733)
chr1 (76-120)||(27703548-27703593)
chr1 (89-121)||(3907470-3907502)
chr1 (76-119)||(44836740-44836784)
[»] chr4 (6 HSPs)
chr4 (76-119)||(35653999-35654043)
chr4 (51-132)||(41305692-41305770)
chr4 (76-134)||(45172664-45172724)
chr4 (76-118)||(28463607-28463650)
chr4 (85-119)||(43154817-43154851)
chr4 (75-118)||(23256596-23256640)
[»] chr7 (10 HSPs)
chr7 (70-132)||(2445789-2445852)
chr7 (76-118)||(4099970-4100013)
chr7 (76-121)||(40001715-40001761)
chr7 (76-120)||(26282561-26282606)
chr7 (76-119)||(26633364-26633408)
chr7 (183-234)||(2445904-2445955)
chr7 (76-118)||(18015601-18015644)
chr7 (89-118)||(6380117-6380146)
chr7 (89-118)||(44894062-44894091)
chr7 (76-132)||(33910050-33910109)
[»] chr8 (10 HSPs)
chr8 (60-124)||(5971759-5971824)
chr8 (76-120)||(34523970-34524015)
chr8 (85-121)||(12531558-12531594)
chr8 (76-118)||(3471602-3471645)
chr8 (51-117)||(7790245-7790312)
chr8 (51-117)||(7810831-7810898)
chr8 (76-118)||(27074576-27074619)
chr8 (76-118)||(43968089-43968132)
chr8 (76-121)||(30915307-30915353)
chr8 (80-119)||(42076109-42076149)
[»] scaffold0482 (1 HSPs)
scaffold0482 (51-117)||(1601-1668)
[»] scaffold0126 (1 HSPs)
scaffold0126 (76-118)||(16712-16755)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 37028985 - 37029214
Alignment:
Q  10 aagaatatctagttgttatgtttcacatcctcatcctcatcaaaagaaaggattattgtaattctttgaaatagctttt-aaattgattgattaagtgat 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37028985 aagaaaatctagttgttatgtttcacatcctcatcctcatcaaaagaaaggattattgtaattctttgaaatagctttttaaattgattgattaagtgat 37029084  T
Q  109 tatacaaattggatgatttgatagtaagaattgaatttttgtctaaaaaggagaactagagtctaaaggtatggtggattggtggtggttaccagtgtgt 208  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  37029085 tatacaaattggatgatttgatagcaagaattgaattttgatctaaaaaggagaactagagtctaaaggtatggtggattggtggtggttacc--ggtgt 37029182  T
Q  209 gtggaggcgtgcgactgagagatggaggtcag 240  Q
    ||||||||||||||||||||||||||||||||    
T  37029183 gtggaggcgtgcgactgagagatggaggtcag 37029214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 524843 - 524965
Alignment:
Q  51 aaaagaaaggattattgtaattctttgaaatagctttt-aaattgattgattaagtgattatacaaattggatgatttgatagtaagaattgaatttttg 149  Q
    |||||||||||| ||||| ||||||| |||||| |||| |||||||||||||||||||||||| ||||| |||| |||||     || |||||||| ||     
T  524843 aaaagaaaggataattgtgattctttaaaatagttttttaaattgattgattaagtgattata-aaattagatggtttga----gagcattgaattcttt 524937  T
Q  150 tctaaaaaggagaactagagtctaaagg 177  Q
    || |||||||||||||||||||||||||    
T  524938 tccaaaaaggagaactagagtctaaagg 524965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 931449 - 931380
Alignment:
Q  51 aaaagaaaggattattgtaattctttgaaatagcttt-taaattgattgattaagtgattatacaaattgg 120  Q
    |||||||| ||||||||| ||||||| || ||||||| |||||||| ||||||||||||||||||||||||    
T  931449 aaaagaaatgattattgtgattctttcaa-tagctttctaaattgactgattaagtgattatacaaattgg 931380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 13423909 - 13423866
Alignment:
Q  76 tgaaatagcttt-taaattgattgattaagtgattatacaaatt 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  13423909 tgaaatagctttctaaattgattgattaagtgattatacaaatt 13423866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 43511663 - 43511618
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattgg 120  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  43511663 tgaaatagcttttcaaattgactgattaagtgattatacaaattgg 43511618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 138189 - 138145
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg 119  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||    
T  138189 tgaaatagcttttcaaattgactgattaagtgattatacaaattg 138145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 19099333 - 19099392
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt--ggatgatttgatag 132  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||  ||||| ||||||||    
T  19099333 tgaaatagctttttaaattgactgattaagtgattatacaaattagggatggtttgatag 19099392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 5829428 - 5829386
Alignment:
Q  76 tgaaatagcttttaaattgattgattaagtgattatacaaattg 119  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  5829428 tgaaatagcttt-aaattgactgattaagtgattatacaaattg 5829386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 42291900 - 42291961
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg--gatgatttgatagta 134  Q
    |||||||| |||| ||||||| |||||||||||||||||||||||  | |||||||||||||    
T  42291900 tgaaatagattttcaaattgactgattaagtgattatacaaattggtggtgatttgatagta 42291961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 17513955 - 17514000
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattgg 120  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  17513955 tgaaataacttttcaaattgactgattaagtgattatacaaattgg 17514000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 20976030 - 20975985
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattgg 120  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  20976030 tgaaatagcttttcaaattgactgattaaatgattatacaaattgg 20975985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 29156225 - 29156192
Alignment:
Q  85 ttttaaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||| ||||||||||||||||||||||    
T  29156225 ttttaaattgactgattaagtgattatacaaatt 29156192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 31244107 - 31243956
Alignment:
Q  61 attattgtaattctttgaaatagcttttaaattgattgattaagtgattatacaaattggatgatttgatagtaagaattgaatttttgtctaaaaagga 160  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    || |||||||| |||||||||||| |    
T  31244107 attattgtgattctttgaaatagcttttcaattgattgattaagtgattatacaaattggatggtttgat----agcattgaattcttgtctaaaaagta 31244012  T
Q  161 gaactagagtctaaag-------gtatggtggattggtggtggttaccagtgtgtg 209  Q
    ||||||||||||||||       ||||| |||||| ||||||||||||||||||||    
T  31244011 gaactagagtctaaaggataaatgtatgttggatttgtggtggttaccagtgtgtg 31243956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 31234971 - 31234819
Alignment:
Q  61 attattgtaattctttgaaatagctttt-aaattgattgattaagtgattatacaaattggatgatttgatagtaagaattgaatttttgtctaaaaagg 159  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    || |||||||| ||||||||||||     
T  31234971 attattgtgattctttgaaatagcttttcaaattgattgattaagtgattatacaaattggatggtttgat----agcattgaattcttgtctaaaaagt 31234876  T
Q  160 agaactagagtctaaag-------gtatggtggattggtggtggttaccagtgtgtg 209  Q
    |||||||||||||||||       ||||| |||||| ||||||||||||||||||||    
T  31234875 agaactagagtctaaaggataaatgtatgttggatttgtggtggttaccagtgtgtg 31234819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 1327653 - 1327589
Alignment:
Q  61 attattgtaattctttgaaatagcttt-taaattgattgattaagtgattatacaaattggatga 124  Q
    |||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  1327653 attattgtgattatttgaaatagttttctaaattgattgattaagtgattatacaaattggatga 1327589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 3748587 - 3748631
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  3748587 tgaaatagcttttcaaattgattgattaagtgattatacaaattg 3748631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 32056129 - 32056050
Alignment:
Q  51 aaaagaaaggattattgtaattctttgaaatagctttt-aaattgattgattaagtgattatacaaattggatgatttgata 131  Q
    |||||||||||||||| | |||  || ||||||||||| ||||||| ||||||||||||||||| ||||||||| |||||||    
T  32056129 aaaagaaaggattattatgattaatt-aaatagctttttaaattgagtgattaagtgattatac-aattggatggtttgata 32056050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 57733 - 57690
Alignment:
Q  76 tgaaatagcttt-taaattgattgattaagtgattatacaaatt 118  Q
    |||||||||||| |||||||| ||||||||||||||||||||||    
T  57733 tgaaatagctttctaaattgactgattaagtgattatacaaatt 57690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 628114 - 628157
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  628114 tgaaatagcttttcaaattgactgattaagtgattatacaaatt 628157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 2618400 - 2618357
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  2618400 tgaaatagcttttcaaattgactgattaagtgattatacaaatt 2618357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 12614735 - 12614778
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  12614735 tgaaatagcttttcaaattgactgattaagtgattatacaaatt 12614778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 15035788 - 15035894
Alignment:
Q  65 ttgtaattctttgaaatagctttt-aaattgattgattaagtgattatacaaa-ttggatgatttgatagtaagaattgaatttttgtctaaaaaggaga 162  Q
    |||| ||||||||||  ||||||| ||||||| || |||| |||||||||||| ||| ||| |||||||| |    ||||||| ||||| ||||||||||    
T  15035788 ttgtgattctttgaatcagcttttcaaattgactggttaaatgattatacaaaattgaatggtttgatagca----ttgaattcttgtccaaaaaggaga 15035883  T
Q  163 actagagtcta 173  Q
    |||| ||||||    
T  15035884 actaaagtcta 15035894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 31861046 - 31861001
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattgg 120  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  31861046 tgaaatagcttttcaaattgactgattaagtaattatacaaattgg 31861001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 4207348 - 4207537
Alignment:
Q  51 aaaagaaaggattattgtaattctttgaaatagctttt-aaattgattgattaagtgattatacaaattggatgatttgatagtaagaattgaatttttg 149  Q
    ||||||||||||| |||| ||||||||||||| ||||  ||||||| ||||||||||||||||||||||||||| ||||||    || |||||||| |||    
T  4207348 aaaagaaaggattgttgtgattctttgaaatatctttccaaattgaatgattaagtgattatacaaattggatggtttgat----agcattgaattcttg 4207443  T
Q  150 tctaaaaaggagaactagagtc-------taaaggtatggtggattggtggtggttaccagtgtgtgtggaggcgtgcgactgagagatggaggtc 238  Q
    || |||||||||||||||||||       || | | ||| | ||||||||||||||||||  |||||||| |||| || ||||||||| |||||||    
T  4207444 tccaaaaaggagaactagagtcgaaatgatatatgcatgttcgattggtggtggttacca--gtgtgtggtggcgcgcaactgagagacggaggtc 4207537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 21660564 - 21660441
Alignment:
Q  51 aaaagaaaggattattgtaattctttgaaatagctttt-aaattgattgattaagtgattatacaaattggatgatttgatagtaagaattgaatttttg 149  Q
    |||||||||||||||||| |||||||||||||  |||| |||||||||||||||||||||||||| ||| |||| |||||||| |    || |||| |||    
T  21660564 aaaagaaaggattattgtgattctttgaaataattttttaaattgattgattaagtgattatacagatttgatggtttgatagca----ttaaattcttg 21660469  T
Q  150 tctaaaaaggagaactagagtctaaagg 177  Q
    || ||||||||||| || ||||||||||    
T  21660468 tccaaaaaggagaaatatagtctaaagg 21660441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 35202712 - 35202907
Alignment:
Q  51 aaaagaaaggattattgtaattctttgaaatagcttttaaa-ttgattgattaagtgattatacaaattggatgatttgatagtaagaattgaatttttg 149  Q
    ||||||||| ||| |||| ||| |||||||| ||||| ||| |||| ||||||||| ||||||||||||||||| ||||||    | |||| |||| ||     
T  35202712 aaaagaaagtattgttgtgattttttgaaattgctttcaaaattgactgattaagtaattatacaaattggatggtttgat----aaaattaaattctta 35202807  T
Q  150 tctaaaaaggagaactagagtctaaag-------gtatggtggattggtggtggttaccagt-----gtgtgtggaggcgtgcgactgagagatggaggt 237  Q
    || |||||||| ||||| |||||| ||       | ||| |||||||||||||||||||| |     ||||||||||||| ||||||| |||||||||||    
T  35202808 tccaaaaaggataactaaagtctataggatagatgaatgttggattggtggtggttaccacttaccagtgtgtggaggcgcgcgactgcgagatggaggt 35202907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 27303232 - 27303188
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  27303232 tgaaatagcttttcaaattgattgattaagtgattatacaaattg 27303188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 7767108 - 7767064
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg 119  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||    
T  7767108 tgaaatagcttttcaaattgactgattaagtgattatacaaattg 7767064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 13401504 - 13401461
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  13401504 tgaaatagcttttcaaattgactgattaagtgattatacaaatt 13401461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 29387773 - 29387816
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  29387773 tgaaataacttttcaaattgattgattaagtgattatacaaatt 29387816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 51939575 - 51939618
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  51939575 tgaaatagcttttcaaattgactgattaagtgattatacaaatt 51939618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 42009291 - 42009325
Alignment:
Q  85 ttttaaattgattgattaagtgattatacaaattg 119  Q
    ||||||||||| |||||||||||||||||||||||    
T  42009291 ttttaaattgactgattaagtgattatacaaattg 42009325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 46904777 - 46904743
Alignment:
Q  85 ttttaaattgattgattaagtgattatacaaattg 119  Q
    ||||||||||| |||||||||||||||||||||||    
T  46904777 ttttaaattgactgattaagtgattatacaaattg 46904743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 1649850 - 1649895
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattgg 120  Q
    |||||||| |||| ||||||| ||||||||||||||||||||||||    
T  1649850 tgaaatagattttcaaattgaatgattaagtgattatacaaattgg 1649895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 23164605 - 23164634
Alignment:
Q  89 aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||||||||||||||||||||    
T  23164605 aaattgattgattaagtgattatacaaatt 23164634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 28132754 - 28132813
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt--ggatgatttgatag 132  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||  || |||||||||||    
T  28132754 tgaaatagctttccaaattgactgattaagtgattatacaaattaagggtgatttgatag 28132813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 36538205 - 36538249
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg 119  Q
    |||||||| |||| ||||||| |||||||||||||||||||||||    
T  36538205 tgaaatagtttttcaaattgactgattaagtgattatacaaattg 36538249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 50677333 - 50677377
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg 119  Q
    |||||||| |||| ||||||| |||||||||||||||||||||||    
T  50677333 tgaaatagtttttcaaattgactgattaagtgattatacaaattg 50677377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 212
Target Start/End: Complemental strand, 12072568 - 12072403
Alignment:
Q  51 aaaagaaaggattattgtaattctttgaaatagctttt-aaattgattgattaagtgattatacaaattggatgatttgatagtaagaattgaatttttg 149  Q
    ||||||| | ||| |||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||| ||| ||||||    |  |||||||| |||    
T  12072568 aaaagaaggaattgttgtgattctttgaaataactttttaaattgattgattaagtgattatataaattgaatggtttgat----aacattgaattcttg 12072473  T
Q  150 tctaaaaaggagaactagagtctaaag-------gtatggtggattggtggtggttaccagtgtgtgtgg 212  Q
    || |||||||||||||| |||||||||       ||||| ||||||||||||||||| ||||||||||||    
T  12072472 tccaaaaaggagaactacagtctaaaggatagatgtatgttggattggtggtggttatcagtgtgtgtgg 12072403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 18916073 - 18916134
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt--ggatgatttgatagta 134  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  18916073 tgaaatagcttttcaaattgattgattaagtgattatacaaattggggatggtttgatagta 18916134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 33280311 - 33280358
Alignment:
Q  85 ttttaaattgattgattaagtgattatacaaattggatgatttgatag 132  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||||    
T  33280311 ttttaaattgattgatcaagtaattatagaaattggatgatttgatag 33280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 38985728 - 38985774
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattgga 121  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  38985728 tgaaatagcttttcaaattgattgattaaatgattatacaaattgga 38985774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 36059924 - 36060020
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg--gatgatttgatagtaagaattgaatttttgtctaaaaaggagaactagagtct 172  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||  | || ||||||    || ||  ||||||||||||||||| |||||||||||||    
T  36059924 tgaaatagctttttaaattaactgattaagtgattatacaaattgatggtggtttgat----agcatcaaatttttgtctaaaaagtagaactagagtct 36060019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 38599447 - 38599403
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg 119  Q
    |||||||| |||| |||||||||||||||||||||||||||||||    
T  38599447 tgaaatagtttttcaaattgattgattaagtgattatacaaattg 38599403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 39081443 - 39081399
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg 119  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||    
T  39081443 tgaaatagcttttcaaattgactgattaagtgattatacaaattg 39081399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 15457543 - 15457500
Alignment:
Q  78 aaatagctttt-aaattgattgattaagtgattatacaaattgg 120  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  15457543 aaatagcttttcaaattgactgattaagtgattatacaaattgg 15457500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 18172959 - 18173002
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  18172959 tgaaatagcttttcaaattgagtgattaagtgattatacaaatt 18173002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 19367438 - 19367481
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  19367438 tgaaatagcttttcaaattgactgattaagtgattatacaaatt 19367481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 21747259 - 21747294
Alignment:
Q  85 ttttaaattgattgattaagtgattatacaaattgg 120  Q
    ||||||||||| ||||||||||||||||||||||||    
T  21747259 ttttaaattgactgattaagtgattatacaaattgg 21747294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 45619021 - 45618979
Alignment:
Q  76 tgaaatagcttttaaattgattgattaagtgattatacaaatt 118  Q
    |||||||||||  ||||||| ||||||||||||||||||||||    
T  45619021 tgaaatagcttccaaattgactgattaagtgattatacaaatt 45618979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 1418954 - 1418910
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg 119  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||    
T  1418954 tgaaatagctttacaaattgactgattaagtgattatacaaattg 1418910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 32810345 - 32810413
Alignment:
Q  51 aaaagaaaggattattgtaattctttgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  32810345 aaaagaaaggattattaggattctttgaaatagcttttcaaattgattgattaagtgattattcaaatt 32810413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 12971451 - 12971406
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattgg 120  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  12971451 tgaaatagcttttcaaattgactgattaagtgattatacaaattgg 12971406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 30004926 - 30004971
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattgg 120  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  30004926 tgaaatagcttttcaaattaattgattaagtgattatacaaattgg 30004971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 15441335 - 15441291
Alignment:
Q  76 tgaaatagcttt-taaattgattgattaagtgattatacaaattg 119  Q
    |||||||||||| |||||||| |||||||||||||||||||||||    
T  15441335 tgaaatagctttataaattgagtgattaagtgattatacaaattg 15441291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 5560518 - 5560483
Alignment:
Q  85 ttttaaattgattgattaagtgattatacaaattgg 120  Q
    ||||||||||| ||||||||||||||||||||||||    
T  5560518 ttttaaattgactgattaagtgattatacaaattgg 5560483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 12884156 - 12884199
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  12884156 tgaaatagctttttaaattgactgattaagtgattatacaaatt 12884199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 18127956 - 18127999
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  18127956 tgaaatagcttttcaaattgactgattaagtgattatacaaatt 18127999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 28885690 - 28885733
Alignment:
Q  76 tgaaatagcttttaaa-ttgattgattaagtgattatacaaatt 118  Q
    |||||||||||| ||| |||||||||||||||||||||||||||    
T  28885690 tgaaatagctttcaaaattgattgattaagtgattatacaaatt 28885733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 27703548 - 27703593
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattgg 120  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||    
T  27703548 tgaaatagctttccaaattgactgattaagtgattatacaaattgg 27703593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 3907502 - 3907470
Alignment:
Q  89 aaattgattgattaagtgattatacaaattgga 121  Q
    ||||||||||||||| |||||||||||||||||    
T  3907502 aaattgattgattaaatgattatacaaattgga 3907470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 44836740 - 44836784
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg 119  Q
    |||||||| |||| ||||||| |||||||||||||||||||||||    
T  44836740 tgaaatagtttttcaaattgactgattaagtgattatacaaattg 44836784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 35653999 - 35654043
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  35653999 tgaaatagcttttcaaattgattgattaagtgattatacaaattg 35654043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 41305770 - 41305692
Alignment:
Q  51 aaaagaaaggattattgtaattctttgaaatagcttt-taaattgattgattaagtgattatacaaattggatgatttgatag 132  Q
    ||||||||  |||| ||| |||||||||||||  ||| ||||||||||||||    |||||||||||||||||||||||||||    
T  41305770 aaaagaaaatattactgtgattctttgaaataattttctaaattgattgatt----gattatacaaattggatgatttgatag 41305692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 45172664 - 45172724
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt-ggatgatttgatagta 134  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| || || ||||||||||    
T  45172664 tgaaatagcttttcaaattgactgattaagtgattatacaaattagggtggtttgatagta 45172724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 28463607 - 28463650
Alignment:
Q  76 tgaaatagcttttaaa-ttgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| || |||||||||||||||||||||||||||    
T  28463607 tgaaatagcttttcaacttgattgattaagtgattatacaaatt 28463650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 43154817 - 43154851
Alignment:
Q  85 ttttaaattgattgattaagtgattatacaaattg 119  Q
    ||||||||||| |||||||||||||||||||||||    
T  43154817 ttttaaattgactgattaagtgattatacaaattg 43154851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 23256640 - 23256596
Alignment:
Q  75 ttgaaatagcttt-taaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||    
T  23256640 ttgaaatagctttctaaattgactgattaagtggttatacaaatt 23256596  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 2445789 - 2445852
Alignment:
Q  70 attctttgaaatagc-ttttaaattgattgattaagtgattatacaaattggatgatttgatag 132  Q
    ||||||||||||| | |||||| ||||| |||||||||||||||||||||| ||| ||||||||    
T  2445789 attctttgaaataaccttttaatttgatagattaagtgattatacaaattgaatggtttgatag 2445852  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 4100013 - 4099970
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  4100013 tgaaatagcttttcaaattgattgattaagtgattatacaaatt 4099970  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 40001715 - 40001761
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattgga 121  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  40001715 tgaaatagcttttcaaattgactgattaagtgattatacaaattgga 40001761  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 26282561 - 26282606
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattgg 120  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  26282561 tgaaatagcttttcaaattgactgattaagtgattatacaaattgg 26282606  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 26633408 - 26633364
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattg 119  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||    
T  26633408 tgaaatagcttttcaaattgactgattaagtgattatacaaattg 26633364  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 2445904 - 2445955
Alignment:
Q  183 tggattggtggtggttaccagtgtgtgtggaggcgtgcgactgagagatgga 234  Q
    ||||||||||||||||||| |||||||||   ||||||| ||||||||||||    
T  2445904 tggattggtggtggttaccggtgtgtgtgacagcgtgcggctgagagatgga 2445955  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 18015601 - 18015644
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||  ||||||||||||||||||||||||||||||    
T  18015601 tgaaatagctttccaaattgattgattaagtgattatacaaatt 18015644  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 6380117 - 6380146
Alignment:
Q  89 aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||||||||||||||||||||    
T  6380117 aaattgattgattaagtgattatacaaatt 6380146  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 44894062 - 44894091
Alignment:
Q  89 aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||||||||||||||||||||    
T  44894062 aaattgattgattaagtgattatacaaatt 44894091  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 33910109 - 33910050
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt--ggatgatttgatag 132  Q
    ||||||||||||| ||||||| |||||||| |||||||||||||  || |||||||||||    
T  33910109 tgaaatagcttttcaaattgactgattaagcgattatacaaattaggggtgatttgatag 33910050  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 5971759 - 5971824
Alignment:
Q  60 gattattgtaattctttgaaatagctttt-aaattgattgattaagtgattatacaaattggatga 124  Q
    |||| |||| ||||||| ||||||||||| ||||||| |||||||||||| ||| |||||||||||    
T  5971759 gattgttgtgattctttaaaatagctttttaaattgactgattaagtgatgatagaaattggatga 5971824  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 34523970 - 34524015
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattgg 120  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  34523970 tgaaatagcttttcaaattgactgattaagtgattatacaaattgg 34524015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 12531594 - 12531558
Alignment:
Q  85 ttttaaattgattgattaagtgattatacaaattgga 121  Q
    ||||||||||| |||||||||||||||||||||||||    
T  12531594 ttttaaattgactgattaagtgattatacaaattgga 12531558  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 3471645 - 3471602
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  3471645 tgaaatagcttttcaaattgactgattaagtgattatacaaatt 3471602  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 7790312 - 7790245
Alignment:
Q  51 aaaagaaaggattattgtaattctttgaaat-agcttttaaattgattgattaagtgattatacaaat 117  Q
    |||| ||||||||||||| |||||||||||| |  ||||||||| ||| | |||||||||||||||||    
T  7790312 aaaacaaaggattattgtgattctttgaaataattttttaaattaattcactaagtgattatacaaat 7790245  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 7810898 - 7810831
Alignment:
Q  51 aaaagaaaggattattgtaattctttgaaat-agcttttaaattgattgattaagtgattatacaaat 117  Q
    |||| ||||||||||||| |||||||||||| |  ||||||||| ||| | |||||||||||||||||    
T  7810898 aaaacaaaggattattgtgattctttgaaataattttttaaattaattcactaagtgattatacaaat 7810831  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 27074619 - 27074576
Alignment:
Q  76 tgaaatag-cttttaaattgattgattaagtgattatacaaatt 118  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  27074619 tgaaatagacttttaaattgactgattaagtgattatacaaatt 27074576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 43968089 - 43968132
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  43968089 tgaaataacttttcaaattgattgattaagtgattatacaaatt 43968132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 30915307 - 30915353
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaattgga 121  Q
    ||||||||||||| ||||||| |||||||||||||||||| ||||||    
T  30915307 tgaaatagcttttcaaattgactgattaagtgattatacatattgga 30915353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 42076149 - 42076109
Alignment:
Q  80 atagctttt-aaattgattgattaagtgattatacaaattg 119  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  42076149 atagcttttcaaattgattgattaagttattatacaaattg 42076109  T

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Target: scaffold0482 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 1601 - 1668
Alignment:
Q  51 aaaagaaaggattattgtaattctttgaaat-agcttttaaattgattgattaagtgattatacaaat 117  Q
    |||| ||||||||||||| |||||||||||| |  ||||||||| ||| | |||||||||||||||||    
T  1601 aaaacaaaggattattgtgattctttgaaataattttttaaattaattcactaagtgattatacaaat 1668  T

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Target: scaffold0126 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 16755 - 16712
Alignment:
Q  76 tgaaatagctttt-aaattgattgattaagtgattatacaaatt 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  16755 tgaaatagcttttcaaattgactgattaagtgattatacaaatt 16712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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