View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5281-Insertion-1 (Length: 165)
Name: NF5281-Insertion-1
Description: NF5281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5281-Insertion-1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 7e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 7e-63
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 36018302 - 36018152
Alignment:
| Q |
11 |
aataagactgtaaaaattgatttgtcttgatgaaatttgattttagtagtatcacatatctttgaatatagctagacaaaatggattttgtcttgaaatc |
110 |
Q |
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| T |
36018302 |
aataagactgtaaaaattgatttgtcttgatgaaatttgattttagtagtattacatatctttgat----gctagacaaaatggattttgtcttgaaatc |
36018207 |
T |
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| Q |
111 |
ttaattttaactggaattgatatattcagcaacaaaaaactagaagtgcaagaaa |
165 |
Q |
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| T |
36018206 |
ttaattttaactggaagtgatatattcagcaacaaaaaactagaagtggaagaaa |
36018152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 7e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 28890060 - 28889920
Alignment:
| Q |
11 |
aataagactgtaaaaattgatttgtcttgatgaaatttgattttagtagtatcacatatctttgaatatagctagacaaaatggattttgtcttgaaatc |
110 |
Q |
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||||||||| | |||||||||||||||||||| |||||| ||||||| | | |||||||||||| |||||||||| || |||||||||||||| ||||| |
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| T |
28890060 |
aataagactattaaaattgatttgtcttgatggaatttggttttagttgatttacatatctttgattatagctagataagatggattttgtcttcaaatc |
28889961 |
T |
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| Q |
111 |
ttaattttaactggaa--ttgatatattcagcaacaaaaaa |
149 |
Q |
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| T |
28889960 |
ttaattttaactagaagtgtgatacattcagcaacaaaaaa |
28889920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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