View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5281_high_2 (Length: 247)

Name: NF5281_high_2
Description: NF5281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5281_high_2
NF5281_high_2
[»] chr8 (2 HSPs)
chr8 (119-247)||(30739006-30739134)
chr8 (9-87)||(34519369-34519447)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 119 - 247
Target Start/End: Complemental strand, 30739134 - 30739006
Alignment:
Q  119 aaataaccacagaaatgcatgaatcaagttaatgaagaaagtagataccaaaattggagaacaagaaatacttacattaaccaccattggggcaaatggc 218  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||  ||||| ||| |||||||| ||||||||||| |||||||||||||||||||||    
T  30739134 aaataatcacagaaatgcatgaatcaatgtaatgaagaaagtagatgacaaaaatggggaacaagatatacttacattgaccaccattggggcaaatggc 30739035  T
Q  219 tttgattctttttcttgctcaactggaat 247  Q
    |||||||||||| ||||||||||||||||    
T  30739034 tttgattcttttgcttgctcaactggaat 30739006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 34519447 - 34519369
Alignment:
Q  9 cataggagaaggggaaacaatgtgaaaagcgaaaataatgtgatattgatatcatggttttggttttgatcatccgtga 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34519447 cataggagaaggggaaacaatgtgaaaagcgaaaataatgtgatattgatatcatggttttggttttgatcatccgtga 34519369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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