View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5282-Insertion-1 (Length: 502)

Name: NF5282-Insertion-1
Description: NF5282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5282-Insertion-1
NF5282-Insertion-1
[»] chr2 (26 HSPs)
chr2 (8-502)||(39459113-39459621)
chr2 (198-499)||(39473287-39473588)
chr2 (184-451)||(39421696-39421963)
chr2 (188-488)||(39137757-39138045)
chr2 (182-502)||(39152445-39152756)
chr2 (202-444)||(39414664-39414906)
chr2 (273-483)||(39161722-39161932)
chr2 (273-483)||(39207262-39207472)
chr2 (202-479)||(39397731-39398008)
chr2 (184-395)||(39381375-39381586)
chr2 (320-499)||(39215496-39215675)
chr2 (253-498)||(39468204-39468449)
chr2 (273-395)||(39389090-39389212)
chr2 (14-87)||(39157516-39157589)
chr2 (186-498)||(39369973-39370285)
chr2 (320-483)||(39222765-39222928)
chr2 (24-108)||(39411378-39411459)
chr2 (320-395)||(39192440-39192515)
chr2 (320-395)||(39198120-39198195)
chr2 (421-498)||(39137705-39137782)
chr2 (254-341)||(44624027-44624114)
chr2 (8-73)||(45223840-45223905)
chr2 (184-236)||(39161948-39162000)
chr2 (184-236)||(39207194-39207246)
chr2 (184-228)||(39215743-39215787)
chr2 (184-240)||(39389022-39389078)
[»] chr7 (2 HSPs)
chr7 (189-488)||(19807707-19807994)
chr7 (421-498)||(19807655-19807732)
[»] chr6 (1 HSPs)
chr6 (183-483)||(16113179-16113479)
[»] chr8 (1 HSPs)
chr8 (257-359)||(45342054-45342156)
[»] chr5 (1 HSPs)
chr5 (50-104)||(38461517-38461571)


Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Complemental strand, 39459621 - 39459113
Alignment:
Q  8 atataaaacaagcaaaaatgtgagaaatagaacatcaacttcatcattaagtttcacattcatcttttgaatactaactccaagttcacacagatatttt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39459621 atataaaacaagcaaaaatgtgagaaatagaacatcaacttcatcattaagtttcacattcatcttttgaatactaactccaagttcacacagatatttt 39459522  T
Q  108 ggactttattcctacctttaagctccctcatatgtgtagatcaggttgtaaaaaataacacatcattaaatgaaatt--------------ttcaataag 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||              |||||||||    
T  39459521 ggactttattcctacctttaagctccctcatatgtgtagatcaggttataaaaaataacacatcattaaatgaaattgttgaaatgaaattttcaataag 39459422  T
Q  194 ctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttcacttgtc 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39459421 ctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttcacttgtc 39459322  T
Q  294 catcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctc 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39459321 catcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctc 39459222  T
Q  394 ttcagcctcgaattctttccgctgttcttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgcttcttttttgaattgagctgc 493  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39459221 ttcagcatcgaattctttccgctgttcttcaaattgcttctcttttaatttgaagtcctcaaactggctttcaaattgcttcttttttgaattgagctgc 39459122  T
Q  494 ttaacctga 502  Q
    |||||||||    
T  39459121 ttaacctga 39459113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 198 - 499
Target Start/End: Original strand, 39473287 - 39473588
Alignment:
Q  198 atgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttcacttgtccatc 297  Q
    ||||||||||||| |||||||||||| |||||||||||||||| || ||||||||||||||| ||||| ||||||||||||||||||||  |  ||||||    
T  39473287 atgaataagaacatttacccgattctatttcctcatcaaaatattttattaatggttcatatcgtttctctgtcaactcaggctccttcggtgttccatc 39473386  T
Q  298 aaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctcttca 397  Q
    |   ||||| ||||||||||| ||||||| ||||| ||||||||  ||||| ||||||||||||||    ||||||||||||||||||||||||||||      
T  39473387 atgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactagtactttgaacttattctctttt 39473486  T
Q  398 gcctcgaattctttccgctgttcttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgcttcttttttgaattgagctgcttaa 497  Q
    | ||||| ||||||||   ||||||||||||||||| || || |||| || ||||||| || | ||| |||||||||||||||| | || |||| |||||    
T  39473487 gactcgagttctttccatcgttcttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttctttttttatttaagctccttaa 39473586  T
Q  498 cc 499  Q
    ||    
T  39473587 cc 39473588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 184 - 451
Target Start/End: Original strand, 39421696 - 39421963
Alignment:
Q  184 tttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagt--tc-attaatggttcatattgtttcactgtcaactcaggc 280  Q
    |||||||||  || ||||||||||||| ||||| |||||  |||||||||||||||| |  || ||||| |   |||| |||||| ||||||||||||||    
T  39421696 tttcaataaattagatgaataagaacatttaccagattcattttcctcatcaaaatattcttctattaaag---catactgtttctctgtcaactcaggc 39421792  T
Q  281 tccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactt 380  Q
    ||||||| |||| |||| || ||||| ||||| ||||| |||||||||||| || || ||||| ||||||||||||| ||||||||||||||||||||||    
T  39421793 tccttcagttgttcatctaacttatttagcttcgactcgggatccttgactagtgctccaaatcgcttgtcttttaatttgagctctttcactagtactt 39421892  T
Q  381 tgaacttattctcttcagcctcgaattctttccgctgttcttcaaattgcttctcttttaattttaagtcc 451  Q
    |||||||||||||||  | || || ||||||||  ||||||||||||| |||||| |||||||| ||||||    
T  39421893 tgaacttattctcttttgacttgagttctttccattgttcttcaaatttcttctcgtttaatttgaagtcc 39421963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 188 - 488
Target Start/End: Complemental strand, 39138045 - 39137757
Alignment:
Q  188 aataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttca 287  Q
    ||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||||| || |||| |||| |||||||| ||||||  |||||||||||||    
T  39138045 aataaactagatgaataagaactcttacccgattctttttcctcatcaaaatagtttatcaatgattcaaattgtttctctgtcagttcaggctccttca 39137946  T
Q  288 cttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaactt 387  Q
     |||||||||||| ||||  ||||||||  | ||||||||||  ||||||            |||||||||||||||||||| || ||||||||||||||    
T  39137945 attgtccatcaaatttatccagctttgaaccaggatccttgatctgtcct------------tcttttaacttgagctctttgaccagtactttgaactt 39137858  T
Q  388 attctcttcagcctcgaattctttccgctgttcttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgcttcttttttgaattg 487  Q
    ||||||||  | ||||| |||||||| | ||||||||| ||||||||||||| ||||  | ||||| |  |||||||||| |||||||| |||||| |||    
T  39137857 attctcttttgactcgagttctttccaccgttcttcaatttgcttctcttttgatttgtaatcctcgacttggctttcaagttgcttctcttttgatttg 39137758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 182 - 502
Target Start/End: Complemental strand, 39152756 - 39152445
Alignment:
Q  182 attttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggct 281  Q
    ||||||||||| ||| |  ||||| |||| ||||| |||||| |||||||||||||||| || ||||||||| ||||||||||| ||||||| ||| |||    
T  39152756 attttcaataaactagacaaataaaaacatttacctgattctatttcctcatcaaaatattttattaatggtccatattgtttctctgtcaaatcatgct 39152657  T
Q  282 ccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtacttt 381  Q
    |||||   |||||||||   ||||| |||||||||||  |||||||| ||| | ||||||  ||||| ||||||||||||||||| |||||| |          
T  39152656 ccttcgactgtccatcatgtttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaacttgagctccttcactgg------ 39152563  T
Q  382 gaacttattctcttcagcctcgaattctttccgctgttcttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgcttctttttt 481  Q
        ||||||||||  | |||||  ||||||| | ||| |||||||||||||||||||  ||| |||||||||| |||| ||||||||| ||||||||||    
T  39152562 ---attattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttctttttt 39152466  T
Q  482 gaattgagctgcttaacctga 502  Q
    || || |||| ||||||||||    
T  39152465 gatttaagctccttaacctga 39152445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 202 - 444
Target Start/End: Original strand, 39414664 - 39414906
Alignment:
Q  202 ataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttcacttgtccatcaaaa 301  Q
    ||||||||| ||||||||||   || ||||||||||||  || ||||| ||||||||||||||  || ||||||||| |||||||   |||||||||||     
T  39414664 ataagaacatttacccgatttgcttccctcatcaaaatcttttattaacggttcatattgtttttctctcaactcagactccttccggtgtccatcaaat 39414763  T
Q  302 ttattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctcttcagcct 401  Q
    || |  ||||||||||| |||||||| |||||||||||||| || || || ||||||||||||||||| || |||| ||||||||||||||| |  | ||    
T  39414764 ttttccagctttgactcaggatccttaacttgtccttcaaactgtttctcatttaacttgagctctttgaccagtagtttgaacttattctcatttgtct 39414863  T
Q  402 cgaattctttccgctgttcttcaaattgcttctcttttaattt 444  Q
     || ||||||||   ||||||||||||||||||||||| ||||    
T  39414864 tgagttctttccatcgttcttcaaattgcttctcttttgattt 39414906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 483
Target Start/End: Complemental strand, 39161932 - 39161722
Alignment:
Q  273 actcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcac 372  Q
    ||||||||||||| | |||||||||||| ||||| | ||||||||  ||||||||||||||||||||||||||||| |||||||| |||||||| ||| |    
T  39161932 actcaggctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctc 39161833  T
Q  373 tagtactttgaacttattctcttcagcctcgaattctttccgctgttcttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgc 472  Q
       |||||||| ||||| |||||  | ||| | ||| |||| | || |||||||||| |||| |||| |||| ||||||||||  || |||||||| |||    
T  39161832 atttactttgagcttatactctttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgc 39161733  T
Q  473 ttcttttttga 483  Q
    || ||||||||    
T  39161732 ttattttttga 39161722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 483
Target Start/End: Original strand, 39207262 - 39207472
Alignment:
Q  273 actcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcac 372  Q
    ||||||||||||| | |||||||||||| ||||| | ||||||||  ||||||||||||||||||||||||||||| |||||||| |||||||| ||| |    
T  39207262 actcaggctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctc 39207361  T
Q  373 tagtactttgaacttattctcttcagcctcgaattctttccgctgttcttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgc 472  Q
       |||||||| ||||| |||||  | ||| | ||| |||| | || |||||||||| |||| |||| |||| ||||||||||  || |||||||| |||    
T  39207362 atttactttgagcttatactctttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgc 39207461  T
Q  473 ttcttttttga 483  Q
    || ||||||||    
T  39207462 ttattttttga 39207472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 202 - 479
Target Start/End: Original strand, 39397731 - 39398008
Alignment:
Q  202 ataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttcacttgtccatcaaaa 301  Q
    ||||||||  |||||||||||| |||||||||  | ||| ||  |||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  39397731 ataagaacctttacccgattctttttcctcattgatatatttttttaacgcttcatattgtttccctgtcaactcaggctccttcagttgtccatcaaat 39397830  T
Q  302 ttattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctcttcagcct 401  Q
    ||||  ||| |||||||  | ||||||||| | ||| |||  ||||| ||||||||||  ||||| | |||   ||||||||||| ||||||||  | ||    
T  39397831 ttatccagccttgactcaagttccttgactcgacctgcaacctgcttctcttttaactcaagctcctgcacctttactttgaactgattctcttttgact 39397930  T
Q  402 cgaattctttccgctgttcttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgcttctttt 479  Q
    | | || ||||| | ||||||||| |||||| |||||| |||| || |||||||  ||||||||||| ||||| ||||    
T  39397931 caagttttttccaccgttcttcaatttgcttatcttttgatttgaaatcctcaacttggctttcaaagtgcttatttt 39398008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 184 - 395
Target Start/End: Original strand, 39381375 - 39381586
Alignment:
Q  184 tttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctcc 283  Q
    ||||| ||| ||| ||||||||||||| ||||| ||||||   ||||| |||| ||| ||  |||||| ||||||||||||  ||||||| | ||||||     
T  39381375 tttcagtaaactatatgaataagaacatttaccagattcttgctcctcgtcaatatattttcttaatgcttcatattgtttacctgtcaatttaggctct 39381474  T
Q  284 ttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttga 383  Q
    |||| ||||||||| || ||||| |||||||| || ||||||||| |||||| |||||| ||||| ||||||||||||||||| ||||    ||||||||    
T  39381475 ttcatttgtccatccaatttatttagctttgaatcaggatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttga 39381574  T
Q  384 acttattctctt 395  Q
    ||| ||||||||    
T  39381575 actcattctctt 39381586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 320 - 499
Target Start/End: Complemental strand, 39215675 - 39215496
Alignment:
Q  320 ggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctcttcagcctcgaattctttccgctgtt 419  Q
    |||||||||||||||||| |||| ||||| ||||||||||||| ||| || ||  |||||||||||||||||||||    ||| | |||||||| | ||     
T  39215675 ggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtc 39215576  T
Q  420 cttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgcttcttttttgaattgagctgcttaacc 499  Q
    |||||||||||||||||||| |||  |||  |||||  || ||||||||||||||||||||| || |||||| |||||||    
T  39215575 cttcaaattgcttctcttttgattcaaagctctcaacttgtctttcaaattgcttcttttttaaactgagctccttaacc 39215496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 498
Target Start/End: Complemental strand, 39468449 - 39468204
Alignment:
Q  253 ttcatattgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtct 352  Q
    ||||||||||||| || ||||||||||||||||| ||||||| ||||| ||| |   ||||||||   | |||||||||||||||||||  ||||| |||    
T  39468449 ttcatattgtttccctttcaactcaggctccttcgcttgtccgtcaaacttaatcgactttgactgaagttccttgacttgtccttcaatctgcttctct 39468350  T
Q  353 tttaacttgagctctttcactagtactttgaacttattctcttcagcctcgaattctttccgctgttcttcaaattgcttctcttttaattttaagtcct 452  Q
    |||||||||| ||| |||||   ||||||||||  ||||||||  | ||  |||||||| | | |||| ||||||||||| |||||| |||| || ||||    
T  39468349 tttaacttgaactccttcacctttactttgaaccgattctcttttgacttcaattctttacaccgttcatcaaattgcttatcttttgatttgaaatcct 39468250  T
Q  453 caaactggctttcaaattgcttcttttttgaattgagctgcttaac 498  Q
    |||  || || ||||| |  ||||||||||| | ||||| ||||||    
T  39468249 caacttgactgtcaaaatatttcttttttgattcgagctccttaac 39468204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 273 - 395
Target Start/End: Original strand, 39389090 - 39389212
Alignment:
Q  273 actcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcac 372  Q
    |||| |||||||| | |||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||| ||||| |||||||| |||||||| |||||    
T  39389090 actcgggctcctttatttgtccatcaaatttattcagctttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctccttcac 39389189  T
Q  373 tagtactttgaacttattctctt 395  Q
       |||||||||||||| |||||    
T  39389190 ctttactttgaacttatactctt 39389212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 39157589 - 39157516
Alignment:
Q  14 aacaagcaaaaatgtgagaaatagaacatcaacttcatcattaagtttcacattcatcttttgaatactaactc 87  Q
    |||||||| ||||||| |||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  39157589 aacaagcataaatgtgcgaaatagaacattaacttcatcgttaagtttcatattcatcttttgaatactaactc 39157516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 498
Target Start/End: Complemental strand, 39370285 - 39369973
Alignment:
Q  186 tcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctcctt 285  Q
    ||||||| ||| ||||||||||||| |||||| | ||| |||||||  ||| ||  |   ||||||  ||||||||||||  |||| ||||||||| |||    
T  39370285 tcaataaactagatgaataagaacatttacccaaatctttttcctcggcaatatgctctgttaatgcgtcatattgtttctttgtcgactcaggcttctt 39370186  T
Q  286 cacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaac 385  Q
     | ||||||||| || ||||| | |||||||||  || |||||||||||| | |||| ||||| |||||||| | || ||| |||||  | ||| |||||    
T  39370185 tagttgtccatccaatttattcatctttgactcaagacccttgacttgtcttccaaactgcttctcttttaattcgaactccttcacctgcactatgaac 39370086  T
Q  386 ttattctcttcagcctcgaattctttccgctgttcttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgcttcttttttgaat 485  Q
    || |||||||    ||| | |||||||| | || ||||||||||||| |||||  |||| |||| ||| |  ||| |||||||||||||| ||| ||| |    
T  39370085 ttgttctcttttaactcaagttctttccaccgtccttcaaattgcttttctttcgatttgaagtgctcgacttgggtttcaaattgcttcctttctgact 39369986  T
Q  486 tgagctgcttaac 498  Q
    ||| || ||||||    
T  39369985 tgaactccttaac 39369973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 320 - 483
Target Start/End: Complemental strand, 39222928 - 39222765
Alignment:
Q  320 ggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctcttcagcctcgaattctttccgctgtt 419  Q
    |||||||||||||||||||||||   ||| ||||| || |||||||| |||||   | ||||||||||||||||||| | ||| | ||  ||||   |||    
T  39222928 ggatccttgacttgtccttcaaaccacttttctttgaagttgagctccttcacctttgctttgaacttattctcttctgactcaagtttattccatcgtt 39222829  T
Q  420 cttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgcttcttttttga 483  Q
    |||||||||||||||||||| |||| || ||||| |  |||||||| || ||||||||||||||    
T  39222828 cttcaaattgcttctcttttgatttaaactcctcgacttggctttcgaaatgcttcttttttga 39222765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 39411459 - 39411378
Alignment:
Q  24 aatgtgagaaatagaacatcaacttcatcattaagtttcacattcatcttttgaatactaactccaagttcacacagatattttg 108  Q
    ||||||||||||||||||||||||||||   ||||||| | |||||| |||| ||||| ||||||||||||||||| ||||||||    
T  39411459 aatgtgagaaatagaacatcaacttcat---taagttttatattcatattttaaataccaactccaagttcacacaaatattttg 39411378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 395
Target Start/End: Original strand, 39192440 - 39192515
Alignment:
Q  320 ggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctctt 395  Q
    |||||||||||| |||||||||| ||||| |||||||| |||||||| |||||   | ||||||||||||||||||    
T  39192440 ggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctctt 39192515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 395
Target Start/End: Original strand, 39198120 - 39198195
Alignment:
Q  320 ggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctctt 395  Q
    |||||||||||| |||||||||| ||||| |||||||| |||||||| |||||   | ||||||||||||||||||    
T  39198120 ggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctctt 39198195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 39137782 - 39137705
Alignment:
Q  421 ttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgcttcttttttgaattgagctgcttaac 498  Q
    ||||| ||||||||||||| |||| || |||||||  ||| |||| ||||||||||||||||| ||||||| ||||||    
T  39137782 ttcaagttgcttctcttttgatttgaaatcctcaacttggttttcgaattgcttcttttttgatttgagctccttaac 39137705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 341
Target Start/End: Complemental strand, 44624114 - 44624027
Alignment:
Q  254 tcatattgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaa 341  Q
    |||| ||||||| ||||||||||| |||||||   ||||||| |||||||||| ||||||||||   ||||||||| |||| ||||||    
T  44624114 tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaa 44624027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 45223840 - 45223905
Alignment:
Q  8 atataaaacaagcaaaaatgtgagaaatagaacatcaacttcatcattaagtttcacattcatctt 73  Q
    ||||| |||||| | |||||||||||||||||||||||||| |||||||  ||||| ||| |||||    
T  45223840 atatataacaagaataaatgtgagaaatagaacatcaacttgatcattagatttcatatttatctt 45223905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 39162000 - 39161948
Alignment:
Q  184 tttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaa 236  Q
    ||||||||| ||| ||||| ||||||| ||||| |||||| ||||||||||||    
T  39162000 tttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaa 39161948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 39207194 - 39207246
Alignment:
Q  184 tttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaa 236  Q
    ||||||||| ||| ||||| ||||||| ||||| |||||| ||||||||||||    
T  39207194 tttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaa 39207246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 39215787 - 39215743
Alignment:
Q  184 tttcaataagctaaatgaataagaacacttacccgattctgtttc 228  Q
    ||||||||| ||| ||||||||||||| |||||||||| ||||||    
T  39215787 tttcaataaactagatgaataagaacatttacccgattgtgtttc 39215743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 39389022 - 39389078
Alignment:
Q  184 tttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaata 240  Q
    ||||||||| ||  ||||||||||||| ||||| |||||| ||||| ||||||||||    
T  39389022 tttcaataaactggatgaataagaacatttaccggattctttttccccatcaaaata 39389078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 189 - 488
Target Start/End: Complemental strand, 19807994 - 19807707
Alignment:
Q  189 ataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctccttcac 288  Q
    |||| ||| ||||||||||||  ||||||||| || ||||||||||||||||||| ||||||| |||| |||||||| |||||||||||| ||||||||     
T  19807994 ataaactagatgaataagaacttttacccgatgctttttcctcatcaaaatagtttattaatgattcaaattgtttctctgtcaactcagactccttcaa 19807895  T
Q  289 ttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaactta 388  Q
    |||||||||||| ||||  ||||||||  | |||||||||| || ||||            |||||||||||||||||||| || |||||||||||||||    
T  19807894 ttgtccatcaaatttatccagctttgaaccaggatccttgatttttcct------------tcttttaacttgagctctttgaccagtactttgaactta 19807807  T
Q  389 ttctcttcagcctcgaattctttccgctgttcttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgcttcttttttgaattga 488  Q
    |||||||  | ||||| |||||||| |  |||||||| ||| ||||||||| ||||  | ||||| |  |||||||||| |||||||| |||||| ||||    
T  19807806 ttctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttgtattcctcgacttggctttcaagttgcttctcttttgatttga 19807707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 19807732 - 19807655
Alignment:
Q  421 ttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgcttcttttttgaattgagctgcttaac 498  Q
    ||||| ||||||||||||| |||| ||||||||||  ||| |||| ||||||||||||||| | |||| || ||||||    
T  19807732 ttcaagttgcttctcttttgatttgaagtcctcaacttggttttcgaattgcttctttttttatttgaactccttaac 19807655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 183 - 483
Target Start/End: Complemental strand, 16113479 - 16113179
Alignment:
Q  183 ttttcaataagctaaatgaataagaacacttacccgattctgtttcctcatcaaaatagttcattaatggttcatattgtttcactgtcaactcaggctc 282  Q
    |||||||||| ||| |||||| ||||||||||||||||||| ||||||| |||| ||  ||  | |||| |||| | |||||| |||| |||||||||||    
T  16113479 ttttcaataaactagatgaatgagaacacttacccgattctttttcctcgtcaatatgttttttaaatgcttcagagtgtttccctgttaactcaggctc 16113380  T
Q  283 cttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttg 382  Q
    ||||| ||||||  |||| |  || |||||||||||  | |||||||||||| ||||||  ||||| ||||||||||||||||| ||| |   |||||||    
T  16113379 cttcagttgtccgccaaattcgttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaacttgagctccttctcctttactttg 16113280  T
Q  383 aacttattctcttcagcctcgaattctttccgctgttcttcaaattgcttctcttttaattttaagtcctcaaactggctttcaaattgcttcttttttg 482  Q
    |||| ||||||||  |  |||| |||||||| | |||||||||||||||| || ||| |||| || | |||||  |||||||| || ||||| |||||||    
T  16113279 aactgattctcttttgattcgagttctttccaccgttcttcaaattgcttatcgtttgatttgaaatactcaacttggctttccaaatgcttattttttg 16113180  T
Q  483 a 483  Q
    |    
T  16113179 a 16113179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 45342156 - 45342054
Alignment:
Q  257 tattgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtctttta 356  Q
    |||||||||  |||||||||| ||||||| | ||||||||| |||||||| |||||||||||  | ||||||| |||  ||||||| || || |||||||    
T  45342156 tattgtttctttgtcaactcaagctcctttatttgtccatccaaattattcagctttgactcaaggtccttgatttgcacttcaaactgattctctttta 45342057  T
Q  357 act 359  Q
    |||    
T  45342056 act 45342054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 38461571 - 38461517
Alignment:
Q  50 atcattaagtttcacattcatcttttgaatactaactccaagttcacacagatat 104  Q
    |||||||||||||| ||||||||||||||||| || |||||||||| ||| ||||    
T  38461571 atcattaagtttcatattcatcttttgaataccaattccaagttcatacaaatat 38461517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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