View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5282-Insertion-2 (Length: 325)
Name: NF5282-Insertion-2
Description: NF5282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5282-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 51388535 - 51388851
Alignment:
| Q |
7 |
agttattccctctccaccccttgagaatcctacattcaaacatatacaaagacaataaaacaataacgaaaatcaattagccttatggataacttgaact |
106 |
Q |
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| T |
51388535 |
agttattccctctccaccccttgagaatcctacattcaaacatatacaaagacaataaaacaataatgaaaatcaattagccttatggataacttgaact |
51388634 |
T |
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| Q |
107 |
cctagtgagcttagttattcctaatcccttacaattccttttgtctaaacttcttttagctatatccctcatagacaaagttaatgagagtttggggtta |
206 |
Q |
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| T |
51388635 |
cctagtgagcttagttattcctaatcccttacaattccttttgtctaaacttcttttagctatatccctcatagacaaagttaatgagagtttggggtta |
51388734 |
T |
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| Q |
207 |
agtctgattgtagcattatattcctggctgaaatccatctgagacttcaaagcctcaacaagtgtaataactctagtgcttctccctactttatctttaa |
306 |
Q |
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| T |
51388735 |
agtctgattgtggcattatattcctggctgaaatccatctgagacttcaaagcctcaacaagtgtaataactttagtgcttctccctactttatctttaa |
51388834 |
T |
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| Q |
307 |
cggcttcacaacaaagt |
323 |
Q |
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| T |
51388835 |
cagcttcacaacaaagt |
51388851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 51384407 - 51384595
Alignment:
| Q |
7 |
agttattccctctccaccccttgagaatcctacattcaaacatatacaaagacaataaaacaataacgaaaatcaattagcc---------ttatggata |
97 |
Q |
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|||||||||||||| |||| | | ||||| ||||||||||||| |||||||||| ||||||||| ||||||||| | | ||||||||| |
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| T |
51384407 |
agttattccctctctacccgtccaaaatccggcattcaaacatattcaaagacaatcaaacaataatgaaaatcaaacactcactagaaagttatggata |
51384506 |
T |
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| Q |
98 |
acttgaactcctagtgagcttagttattcctaatcccttacaattccttttgtctaaacttcttttagctatatccctcatagacaaag |
186 |
Q |
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||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||||| |||||| |
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| T |
51384507 |
acttgtactcctagtgagcttagttattcccaatcccttacgattccttttgtctaaacttcttttagcaatttccctcataaacaaag |
51384595 |
T |
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