View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5282_high_2 (Length: 353)

Name: NF5282_high_2
Description: NF5282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5282_high_2
NF5282_high_2
[»] chr2 (6 HSPs)
chr2 (16-334)||(39459617-39459923)
chr2 (121-180)||(35198244-35198303)
chr2 (110-159)||(42043199-42043248)
chr2 (68-215)||(9956951-9957098)
chr2 (92-146)||(17292079-17292133)
chr2 (110-159)||(31980826-31980875)
[»] chr5 (3 HSPs)
chr5 (51-180)||(38461753-38461885)
chr5 (121-176)||(28322232-28322287)
chr5 (53-100)||(11109484-11109531)
[»] chr1 (3 HSPs)
chr1 (121-174)||(26462658-26462711)
chr1 (68-144)||(41837364-41837440)
chr1 (61-112)||(43609760-43609811)
[»] chr8 (5 HSPs)
chr8 (102-180)||(34259789-34259867)
chr8 (122-167)||(25799148-25799193)
chr8 (121-161)||(29096952-29096992)
chr8 (122-158)||(7007928-7007964)
chr8 (121-157)||(43806209-43806245)
[»] chr7 (5 HSPs)
chr7 (60-106)||(7643757-7643803)
chr7 (121-180)||(18750863-18750922)
chr7 (123-196)||(23948363-23948436)
chr7 (124-180)||(30737168-30737224)
chr7 (123-159)||(32855362-32855398)
[»] chr3 (6 HSPs)
chr3 (121-199)||(49636839-49636917)
chr3 (108-159)||(18268005-18268056)
chr3 (108-167)||(47542535-47542594)
chr3 (103-168)||(1502573-1502638)
chr3 (110-159)||(27858348-27858397)
chr3 (126-174)||(55053774-55053822)
[»] scaffold0024 (1 HSPs)
scaffold0024 (110-180)||(151104-151174)
[»] chr6 (3 HSPs)
chr6 (121-159)||(34625742-34625780)
chr6 (121-173)||(2468485-2468538)
chr6 (127-184)||(17422274-17422331)
[»] chr4 (3 HSPs)
chr4 (121-173)||(27131685-27131738)
chr4 (60-160)||(19262877-19262976)
chr4 (123-159)||(32369927-32369963)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 39459923 - 39459617
Alignment:
Q  16 atgagtaccaatgaaatgagtgacaacctctatactatagccctgacacttatgatcaaaggcgtgtccggtgttcaacatgtgtcggtgttcaacaccg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||            | |||||||    
T  39459923 atgagtaccaatgaaatgagtgacaacctctatactatagccctgacacttatgatcaaaggcgtgtctggtgttcaac------------tgaacaccg 39459836  T
Q  116 acgcgtgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtctccgatgtttgtgtctatgttggtgcttcat 215  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39459835 acacgtgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtctccgatgtttgtgtctgtgttggtgcttcat 39459736  T
Q  216 agataagaacacaaaatatgaaaaagtatggcaaacaacagaatccaaatagggaaataacaaacttgtgtgtttttctagttgcagaccgagaccatgt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39459735 agataagaacacaaaatatgaaaaagtatggcaaacaacagaatccaaatagggaaataacaaacttgtgtgtttttctagttgcagaccgagaccatgt 39459636  T
Q  316 atcattgtcatcagatata 334  Q
    |||||||||||||||||||    
T  39459635 atcattgtcatcagatata 39459617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 35198244 - 35198303
Alignment:
Q  121 tgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgt 180  Q
    |||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||    
T  35198244 tgtgattacattcaattaattcattttcttaaattatgaccaatatcgatgtgttagtgt 35198303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 42043199 - 42043248
Alignment:
Q  110 acaccgacgcgtgtgattacattcaattaattcatttccttaaattatta 159  Q
    |||||||||| ||| ||||||||||||||||||||||  |||||||||||    
T  42043199 acaccgacgcatgttattacattcaattaattcattttattaaattatta 42043248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 215
Target Start/End: Original strand, 9956951 - 9957098
Alignment:
Q  68 tgatcaaaggcgtgtccggtgttcaacatgtgtcggtgttcaacaccgacgcgtgtgattacattcaattaattcatttccttaaattattaccaatgtc 167  Q
    ||||||||||| ||||||||||   |||||||||||||| |  ||| ||| | ||| ||||| ||||| ||||| ||||  | ||||||||||   | ||    
T  9956951 tgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactggtctc 9957050  T
Q  168 gacgtgttagtgtggtctccgatgtttgtgtctatgttggtgcttcat 215  Q
    ||||||||||||| || |||| |||  |||| | |||| |||||||||    
T  9957051 gacgtgttagtgtcgtgtccggtgtcagtgtttgtgttagtgcttcat 9957098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 17292079 - 17292133
Alignment:
Q  92 aacatgtgtcggtgttcaacaccgacgcgtgtgattacattcaattaattcattt 146  Q
    ||||||||||||||| || ||||||| | |||||| |||||||||||||| ||||    
T  17292079 aacatgtgtcggtgtacagcaccgacacatgtgatgacattcaattaatttattt 17292133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 31980875 - 31980826
Alignment:
Q  110 acaccgacgcgtgtgattacattcaattaattcatttccttaaattatta 159  Q
    |||| ||| ||||||||||||||||||||| |||||| | ||||||||||    
T  31980875 acactgactcgtgtgattacattcaattaactcattttcgtaaattatta 31980826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 38461885 - 38461753
Alignment:
Q  51 tatagccctgacacttatgatcaaaggcgtgtccggtgttcaacatgtgtcggtgttcaacaccgacgcgtgtgat--tacattcaattaattcatttcc 148  Q
    |||||| | ||||||||||||| |||  |||||  |||||||||| |||||||||| |||||| ||| | || |||  ||  ||||||||||| ||||||    
T  38461885 tatagcaccgacacttatgatcgaagatgtgtctagtgttcaacacgtgtcggtgtccaacactgacacatgagataatattttcaattaatttatttcc 38461786  T
Q  149 ttaaattatta-ccaatgtcgacgtgttagtgt 180  Q
    ||||||||||| ||||||||| |||||||||||    
T  38461785 ttaaattattacccaatgtcgtcgtgttagtgt 38461753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 28322287 - 28322232
Alignment:
Q  121 tgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgtta 176  Q
    |||||||||||||||||||||||||| || ||||||| || | |||||||||||||    
T  28322287 tgtgattacattcaattaattcattttctcaaattatcactagtgtcgacgtgtta 28322232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 11109531 - 11109484
Alignment:
Q  53 tagccctgacacttatgatcaaaggcgtgtccggtgttcaacatgtgt 100  Q
    |||||||||||||| |||| |||||||| |||||||| ||||||||||    
T  11109531 tagccctgacacttttgatgaaaggcgtatccggtgtccaacatgtgt 11109484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 26462658 - 26462711
Alignment:
Q  121 tgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgt 174  Q
    |||||||||||||||||| ||||||| |||||||||||| || |||||||||||    
T  26462658 tgtgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgt 26462711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 41837440 - 41837364
Alignment:
Q  68 tgatcaaaggcgtgtccggtgttcaacatgtgtcggtgttcaacaccgacgcgtgtgattacattcaattaattcat 144  Q
    ||||| |||| ||||||||||||  ||||||||  |||||  |||| ||| ||||| ||||||||||||||||||||    
T  41837440 tgatcgaaggtgtgtccggtgttagacatgtgtatgtgttagacacggactcgtgtcattacattcaattaattcat 41837364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 43609760 - 43609811
Alignment:
Q  61 acacttatgatcaaaggcgtgtccggtgttcaacatgtgtcggtgttcaaca 112  Q
    |||||| |||||||| |||||||| |||| |||||||||||||||| |||||    
T  43609760 acacttctgatcaaaagcgtgtccagtgtccaacatgtgtcggtgtccaaca 43609811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 34259789 - 34259867
Alignment:
Q  102 ggtgttcaacaccgacgcgtgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgt 180  Q
    ||||| |||||||||| ||| |  ||| ||||||||| ||||||| || ||||||||||| ||||| ||||||||||||    
T  34259789 ggtgtccaacaccgacacgtctagttatattcaattatttcattttctcaaattattaccgatgtctacgtgttagtgt 34259867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 25799193 - 25799148
Alignment:
Q  122 gtgattacattcaattaattcatttccttaaattattaccaatgtc 167  Q
    ||||| ||||||||||||||||||| || |||||||||||||||||    
T  25799193 gtgatcacattcaattaattcattttctcaaattattaccaatgtc 25799148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 29096992 - 29096952
Alignment:
Q  121 tgtgattacattcaattaattcatttccttaaattattacc 161  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  29096992 tgtgattacattcaattaatttattttcttaaattattacc 29096952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 7007928 - 7007964
Alignment:
Q  122 gtgattacattcaattaattcatttccttaaattatt 158  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  7007928 gtgattacattcaattaattcattttctttaattatt 7007964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 43806209 - 43806245
Alignment:
Q  121 tgtgattacattcaattaattcatttccttaaattat 157  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  43806209 tgtgattatattcaattaattcattttcttaaattat 43806245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 7643803 - 7643757
Alignment:
Q  60 gacacttatgatcaaaggcgtgtccggtgttcaacatgtgtcggtgt 106  Q
    |||||||||||||||||||||||||||||| ||||| || |||||||    
T  7643803 gacacttatgatcaaaggcgtgtccggtgtccaacacgtttcggtgt 7643757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 18750922 - 18750863
Alignment:
Q  121 tgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgt 180  Q
    ||||||||||||||||||  |||||| ||||||||||||||  |||||| |||| |||||    
T  18750922 tgtgattacattcaattatgtcattttcttaaattattaccgttgtcgatgtgtcagtgt 18750863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 23948436 - 23948363
Alignment:
Q  123 tgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtctccgatgtttgt 196  Q
    ||||||||||||||||||| ||||  | ||||||||| || ||||||| ||||||| | || |||| |||||||    
T  23948436 tgattacattcaattaattgattttttcaaattattatcagtgtcgacatgttagtcttgtgtccggtgtttgt 23948363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 30737168 - 30737224
Alignment:
Q  124 gattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgt 180  Q
    ||||||||||| |||  |||||| ||||||||||||| | |||||| ||||||||||    
T  30737168 gattacattcagttatgtcattttcttaaattattacaactgtcgatgtgttagtgt 30737224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 32855398 - 32855362
Alignment:
Q  123 tgattacattcaattaattcatttccttaaattatta 159  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  32855398 tgattacattcaattaaatcattttcttaaattatta 32855362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 49636839 - 49636917
Alignment:
Q  121 tgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtctccgatgtttgtgtc 199  Q
    |||||||||||||||||||||||||| || ||||||||||||  |||||  ||| ||||| || || ||||| ||||||    
T  49636839 tgtgattacattcaattaattcattttctcaaattattaccagagtcgatctgtcagtgttgtgtctgatgtatgtgtc 49636917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 18268005 - 18268056
Alignment:
Q  108 caacaccgacgcgtgtgattacattcaattaattcatttccttaaattatta 159  Q
    |||||||||| | ||||||||| |||||||||||||||| || |||||||||    
T  18268005 caacaccgacacatgtgattacgttcaattaattcattttctcaaattatta 18268056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 47542594 - 47542535
Alignment:
Q  108 caacaccgacgcgtgtgattacattcaattaattcatttccttaaattattaccaatgtc 167  Q
    |||||||||| | ||||||||||||||| || ||||||| || |||||||||||| ||||    
T  47542594 caacaccgacacatgtgattacattcaaatagttcattttctcaaattattaccagtgtc 47542535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 1502638 - 1502573
Alignment:
Q  103 gtgttcaacaccgacgcgtgtgattacattcaattaattcatttccttaaattattaccaatgtcg 168  Q
    |||| |||||| ||| | ||||||||||||||||||  |||||| |||| |||||||||| |||||    
T  1502638 gtgtccaacacagacacatgtgattacattcaattatgtcattttcttagattattaccagtgtcg 1502573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 27858397 - 27858348
Alignment:
Q  110 acaccgacgcgtgtgattacattcaattaattcatttccttaaattatta 159  Q
    |||||||||| ||||||||||||||||||  |||||| || |||||||||    
T  27858397 acaccgacgcctgtgattacattcaattaggtcattttctcaaattatta 27858348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 55053822 - 55053774
Alignment:
Q  126 ttacattcaattaattcatttccttaaattattaccaatgtcgacgtgt 174  Q
    |||||||||  |||||||||| ||||||||||||||| | |||||||||    
T  55053822 ttacattcatataattcattttcttaaattattaccactctcgacgtgt 55053774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 151104 - 151174
Alignment:
Q  110 acaccgacgcgtgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgt 180  Q
    ||||| |||| |||||||| ||||||||| || |||| ||||||||||||||  || || |||||||||||    
T  151104 acaccaacgcatgtgattatattcaattattttatttacttaaattattacccgtgccggcgtgttagtgt 151174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 34625780 - 34625742
Alignment:
Q  121 tgtgattacattcaattaattcatttccttaaattatta 159  Q
    |||||||||||||||||||||||||| || |||||||||    
T  34625780 tgtgattacattcaattaattcattttctcaaattatta 34625742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 2468485 - 2468538
Alignment:
Q  121 tgtgattacattcaattaattc-atttccttaaattattaccaatgtcgacgtg 173  Q
    |||| ||||||||||||| ||| |||| |||||||||||||||||||| |||||    
T  2468485 tgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtg 2468538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 17422274 - 17422331
Alignment:
Q  127 tacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtc 184  Q
    ||||||||||||  |||||| || ||||||||| |  |||||||||||||||||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtcgacgtgttagtgtggtc 17422331  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 27131685 - 27131738
Alignment:
Q  121 tgtgattacattcaattaattc-atttccttaaattattaccaatgtcgacgtg 173  Q
    |||| ||||||||||||| ||| |||| |||||||||||||||||||| |||||    
T  27131685 tgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtg 27131738  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 19262877 - 19262976
Alignment:
Q  60 gacacttatgatcaaaggcgtgtccggtgttcaacatgtgtcggtgttcaacaccgacgcgtgtgattacattcaattaattcatttccttaaattatta 159  Q
    ||||||| | || ||||| |||||| |||| | |||||||||||||| |||||  ||| | ||||||||||||||||||  |||| | || |||||||||    
T  19262877 gacacttctaataaaaggtgtgtccagtgtccgacatgtgtcggtgt-caacattgacacatgtgattacattcaattatgtcatcttctcaaattatta 19262975  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 32369927 - 32369963
Alignment:
Q  123 tgattacattcaattaattcatttccttaaattatta 159  Q
    |||||||||||||||||||||||| || |||||||||    
T  32369927 tgattacattcaattaattcattttctcaaattatta 32369963  T

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