View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5282_low_1 (Length: 654)
Name: NF5282_low_1
Description: NF5282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5282_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 42935766 - 42935391
Alignment:
| Q |
13 |
catcaggaactgtgatggagccaaagaccaatactactgatgt---tgatcatgaaaatgttggtggtgttgttaagaaccgcgaagctacgttggcaac |
109 |
Q |
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| T |
42935766 |
catcaggaactgtgatggagccaaagaccaatacttctgatgtggttgatcatgaaaatgtcggtggtgttgttaagaaccgtgaagctacgttggcaac |
42935667 |
T |
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| Q |
110 |
gttgaatgtgttgaaagagagcttggaacaagagttgggacaagttaagtttctaatgaatctaattggtggagaggagattcatgtggctgaaagtgat |
209 |
Q |
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| T |
42935666 |
gttgaatgtgttgaaagagagcttggaacaagagttgggacaagttaagtttctaatgaatctaattggtggagaggagattcatgtggctgaaagtgat |
42935567 |
T |
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| Q |
210 |
gagaaaatggtgcaagagatctctaagttgaggacagaattggaaaatgagaagaagaagaacttgcagctggagatgcagctggagaatatcaagcttc |
309 |
Q |
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| T |
42935566 |
gagaaaatggtgcaagagatctctaagttgaggacagaattggaaaatgagaagaagaagaacttgcagctggagatgcagctggagaatatcaagcttc |
42935467 |
T |
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| Q |
310 |
acctaatttcctctgctgctaatagtcctactagttagttaacttgataatatgtgtttctacataatatctctga |
385 |
Q |
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| T |
42935466 |
acctaatttcctctgctgctaatagtcctactagttaattaacttgataatatgtgtttctacataatatctctga |
42935391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 427 - 654
Target Start/End: Complemental strand, 42935391 - 42935164
Alignment:
| Q |
427 |
atatgttgtatttcttaaagttagatactctactggagatgtgcaacaatcatagagaatttaagctcctgttacggaatttggattctctataactgtt |
526 |
Q |
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| T |
42935391 |
atatgttgtatttcttaaatttagatactctaccggagatgtgcaacaatcatagagaatttaagctcctgttacggaatttggattctctataactgtt |
42935292 |
T |
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| Q |
527 |
gcgcagttcaacggattataagatagttggatctaaattttaataaatttagatgaaacggccctatagagaccgtcacatcaattttaataaatttaga |
626 |
Q |
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| T |
42935291 |
gcacagtgcaacggattataagatagttggatctaaattttaataaatttagatgaaacggccctatagagaccgtcacatcaattttaataaatttaga |
42935192 |
T |
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| Q |
627 |
tccaacggtcctacagatacctttgcat |
654 |
Q |
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| T |
42935191 |
tccaacggtcctacagagaccgttgcat |
42935164 |
T |
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