View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5283-Insertion-2 (Length: 730)

Name: NF5283-Insertion-2
Description: NF5283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5283-Insertion-2
NF5283-Insertion-2
[»] chr1 (1 HSPs)
chr1 (8-730)||(7441961-7442698)


Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 8 - 730
Target Start/End: Original strand, 7441961 - 7442698
Alignment:
Q  8 caaccaaatcaaatttcttgccttttcccccgaaaaagacatgatggcttatatttcttagatttgtttggtttgaaggnnnnnnnnnnnnnnnnnnttt 107  Q
    ||||||||||| ||||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||||||||||                  |||    
T  7441961 caaccaaatcacatttcttgcctttcccccctaaaaagtaatgatggcttatatttcttagatttgtttggtttgaaggaaaaataaaataaaaaa-ttt 7442059  T
Q  108 ccatacatgagtttcatcatttattacaaactgta----attgtagctcttgtttgtttcatgttttcaatttgcatgtcaaatatttgtatgtacaatt 203  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7442060 ccatacatgagtttcatcatttattacaaactgtacgtaattgtagctcttgtttgtttcatgttttcaatttgcatgtcaaatatt-gtatgtacaatt 7442158  T
Q  204 ccatttcttttccttgttatatatattggattcttaagatgatccattttgctatgattcagtttggttaaaaaaatcaaagtgtaaatgtgaaaagaat 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7442159 ccatttcttttccttgttatataaattggattcttaagatgatccattttgctatgattcagtttggttaaaaaaatcaaagtgtaaatgtgaaaagaat 7442258  T
Q  304 atataataccacnnnnnnnnnnnnt--tatttaatttatattttcaaataagaagataatttagaaaatcaagcagactaaatttgtatttaatttaact 401  Q
    ||||||||||||            |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7442259 atataataccacaaataaaatatatattatttaatttatattttcaaataagaagataatttagaaaatcaagcagactaaatttgtatttaatttaact 7442358  T
Q  402 aattttattgaaaatgtaaattaaatatatatat--------cataacaccctggcaagagtgtggtcaagttg--------atgccctttctttcggca 485  Q
    ||||||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  7442359 aattttattgaaaatgtaaattatatatatatatatatatatcataacaccctggcaagagtgtggtcaagttgtgggagggatgccctttctttcggca 7442458  T
Q  486 gatggcacttctttttgtcgtaaagtgtaactaaaa--accttatccaacgcatatagtatcccatgttcgaatttatgattgaacaatgcatataaacc 583  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  7442459 gatggcacttctttttgtcgtaaagtgtaactaaaaaaaccttatccaacgcatatagtatcccatgtttgaatttatgattgaacaatgcatataaact 7442558  T
Q  584 aggaagatagctataacaaggaataagaacaaatatagtcagaaaagaagaaaggacgataacaaattaataatggaattgataatgcgtataaactata 683  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  7442559 aggaagatagctataacaaggaataagaacaaatatagtcagaaaagaagaaaggacgataacaaattaataatggaattgataatgcg-------tata 7442651  T
Q  684 aactatgaagaacctaacctaatcataaatatctcattcacaccact 730  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  7442652 aactatgaagaacctaaccgaatcataaatatctcattcacaccact 7442698  T

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