View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5283-Insertion-5 (Length: 250)
Name: NF5283-Insertion-5
Description: NF5283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5283-Insertion-5 |
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| [»] chr3 (8 HSPs) |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 24930554 - 24930311
Alignment:
| Q |
7 |
aataatgaatcacatgttaaatgagttagggttagaatacaaaacaaacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaa |
106 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24930554 |
aataatgaatcacatgttgaatgagttagggttagaatacaaaacaaacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaa |
24930455 |
T |
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| Q |
107 |
tttggacatctcttccatttatttattttagctaactccaaaaacttatcatccaaatctatttcatttttatcgcgtttcaaatcttgaaactcctgac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24930454 |
tttggacatctcttccatttatttattttagctaactccaaaaacttatcatccaaatctatttcatttttatcgcgtttcaaatcttgaaactcctgac |
24930355 |
T |
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| Q |
207 |
aattcatctccgcatgccatggaaccttacactgtgcacagaac |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24930354 |
aattcatctccgcatgccatggaaccttacactgtgcacagaac |
24930311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 24976357 - 24976562
Alignment:
| Q |
41 |
gaatacaaaacaaacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagcta |
140 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| || ||| | ||||| | |
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| T |
24976357 |
gaatacaaaataaacctgcatttcatgtgttcacatccatcacttctcttgacatagatagagcaatttgggcatctctgccacttctttctgttagcca |
24976456 |
T |
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| Q |
141 |
actccaaaaacttatcatccaaatctatttcatttttatcgcgtttcaaatcttgaaactcctgacaattcatctccgcatgccatggaaccttacactg |
240 |
Q |
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|||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24976457 |
actccaaaaatttatcatccaaatcttgttcctttttaggacgtttcaaatcttgaaactcctgacaattcatctccgcatgccatggaaccttacattg |
24976556 |
T |
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| Q |
241 |
tgcaca |
246 |
Q |
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|||||| |
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| T |
24976557 |
tgcaca |
24976562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 24991209 - 24991109
Alignment:
| Q |
53 |
aacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaact |
152 |
Q |
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||||||||| ||||||||||||||||| || |||||| |||| ||||| || ||||||||||||||||| || | | ||||||| ||||||||||||| |
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| T |
24991209 |
aacctgcatctcatgtgttcacatccagtagttctctgtacatgcatagaacattttggacatctcttccacttttctcttttagccaactccaaaaact |
24991110 |
T |
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| Q |
153 |
t |
153 |
Q |
| |
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| |
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|
| T |
24991109 |
t |
24991109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 25014746 - 25014646
Alignment:
| Q |
53 |
aacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaact |
152 |
Q |
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||||||||| ||||||||||||||||| || |||||| |||| ||||| || ||||||||||||||||| || | | ||||||| ||||||||||||| |
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| T |
25014746 |
aacctgcatctcatgtgttcacatccagtagttctctgtacatgcatagaacattttggacatctcttccacttttctcttttagccaactccaaaaact |
25014647 |
T |
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| Q |
153 |
t |
153 |
Q |
| |
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| |
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| T |
25014646 |
t |
25014646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 25013625 - 25013525
Alignment:
| Q |
53 |
aacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaact |
152 |
Q |
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||||||||| ||||||||||||||||| || |||||| |||| ||||| || ||||||||||| ||||| || | | ||||||| ||||||||||||| |
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| T |
25013625 |
aacctgcatctcatgtgttcacatccagtagttctctgtacatgcatagaacattttggacatcttttccacttttctcttttagccaactccaaaaact |
25013526 |
T |
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| Q |
153 |
t |
153 |
Q |
| |
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| T |
25013525 |
t |
25013525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 21794625 - 21794695
Alignment:
| Q |
53 |
aacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttcca |
123 |
Q |
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| T |
21794625 |
aacctgcacatcatgtgattacatccattaattctctcgacatagatagagcaacttggacatcttttcca |
21794695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 25027572 - 25027510
Alignment:
| Q |
64 |
catgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccattt |
126 |
Q |
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||||||||||||||||| | |||||| ||||| |||||||| || |||||||||| |||||| |
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| T |
25027572 |
catgtgttcacatccaccatttctctggacatgcatagagcatttgggacatctctgccattt |
25027510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 42028864 - 42028831
Alignment:
| Q |
41 |
gaatacaaaacaaacctgcatttcatgtgttcac |
74 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
42028864 |
gaatacaaaataaacctgcatttcatgtgttcac |
42028831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 40 - 249
Target Start/End: Original strand, 1411 - 1620
Alignment:
| Q |
40 |
agaatacaaaacaaacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttccatttatttattttagct |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||| |
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| T |
1411 |
agaatacaaaacaaacctgcatttcatgtgttcacatccactccttctcttgacatagatagagcaatttggacatctctgccacttgtttcttttagct |
1510 |
T |
|
| Q |
140 |
aactccaaaaacttatcatccaaatctatttcatttttatcgcgtttcaaatcttgaaactcctgacaattcatctccgcatgccatggaaccttacact |
239 |
Q |
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|||| ||||||||||||||||||||||| ||||||| ||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |
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| T |
1511 |
aacttcaaaaacttatcatccaaatctacttcatttgtattgtgtttcaaatcttgaaattcctgacagttcatctccgcatgccatggaaccttacatt |
1610 |
T |
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| Q |
240 |
gtgcacagaa |
249 |
Q |
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||||| |||| |
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| T |
1611 |
gtgcatagaa |
1620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 26104510 - 26104443
Alignment:
| Q |
83 |
cttctcttgacatagatagagcaatttggacatctcttccatttatttattttagctaactccaaaaa |
150 |
Q |
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||||||| |||||| |||||||| |||||||||||| |||||| | | ||||||| ||||||||||| |
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| T |
26104510 |
cttctctggacatacatagagcatcttggacatctctgccatttttctcttttagccaactccaaaaa |
26104443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 21261496 - 21261462
Alignment:
| Q |
41 |
gaatacaaaacaaacctgcatttcatgtgttcaca |
75 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |
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| T |
21261496 |
gaatacaaaataaacctgcatttcatgtgttcaca |
21261462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 28219574 - 28219607
Alignment:
| Q |
41 |
gaatacaaaacaaacctgcatttcatgtgttcac |
74 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
28219574 |
gaatacaaaataaacctgcatttcatgtgttcac |
28219607 |
T |
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Back To:
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