View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5283-Insertion-6 (Length: 212)
Name: NF5283-Insertion-6
Description: NF5283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5283-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 42860306 - 42860451
Alignment:
| Q |
7 |
aattagtgggttcgttgcttttttcagcataaggtttggttttgggtctcgctgaatctctgttggggttgttaattatgtgtttctcaatttcaaactg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42860306 |
aattagtgggttcgttgcttttttcagcataaggtttggttttgggtcttgttgaatctctgttggggttgttaattatgtgtttctcaatttcaaactg |
42860405 |
T |
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| Q |
107 |
gtctcatttcactctctgtatttgagtttgtttcaacttccccgtg |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42860406 |
gtctcatttcactctctgtatttgagtttgtttcaacttccccgtg |
42860451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 28699667 - 28699812
Alignment:
| Q |
7 |
aattagtgggttcgttgcttttttcagcataaggtttggttttgggtctcgctgaatctctgttggggttgttaattatgtgtttctcaatttcaaactg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28699667 |
aattagtgggttcgttgcttttttcagcataaggtttggttttgggtcttgttgaatctctgttggggttgttaattatgtgtttctcaatttcaaactg |
28699766 |
T |
|
| Q |
107 |
gtctcatttcactctctgtatttgagtttgtttcaacttccccgtg |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28699767 |
gtctcatttcactctctgtatttgagtttgtttcaacttccccgtg |
28699812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 9406711 - 9406570
Alignment:
| Q |
7 |
aattagtgggttcgttgcttttttcagcataaggtttggttttgggtctcgctgaatctctgttggggttgttaattatgtgtttctcaatttcaaactg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |||| ||||||||||||||||||||| |
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| T |
9406711 |
aattagtgggttcgttgcttttttcagcataaggtttggttttgggtcttgttgaatctctgatggggttgtcaattctgtgtttctcaatttcaaacta |
9406612 |
T |
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| Q |
107 |
gtctcatttcactctctgtatttgagtttgtttcaacttccc |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
9406611 |
gtctcatttcactctctgtatttgagtttgtttcaacttccc |
9406570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 9404542 - 9404409
Alignment:
| Q |
15 |
ggttcgttgcttttttcagcataaggtttggttttgggtctcgctgaatctctgttggggttgttaattatgtgtttctcaatttcaaactggtctcatt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |||| ||||||||||||||||||||| |||||||| |
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| T |
9404542 |
ggttcgttgcttttttcagcataaggtttggttttgggtcttgttgaatctctgatggggttgtcaattctgtgtttctcaatttcaaactagtctcatt |
9404443 |
T |
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| Q |
115 |
tcactctctgtatttgagtttgtttcaacttccc |
148 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
9404442 |
tcactctctgtatttgagtttgtttcaacttccc |
9404409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 10670337 - 10670192
Alignment:
| Q |
7 |
aattagtgggttcgttgcttttttcagcataaggtttggttttgggtctcgctgaatctctgttggggttgttaattatgtgtttctcaatttcaaactg |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||| ||||||||||||||||||| || |
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| T |
10670337 |
aattagtgggtttgttgcttttttcagcataaggtttgattttgggtcttgttgaatctctgttgggattgttaattttgtgtttctcaatttcaaattg |
10670238 |
T |
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| Q |
107 |
gtctcatttcactctctgtatttgagtttgtttcaacttccccgtg |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10670237 |
gtctcatttcactctctgtatttgagtttgtttcaactttcccgtg |
10670192 |
T |
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