View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5283-Insertion-7 (Length: 130)

Name: NF5283-Insertion-7
Description: NF5283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5283-Insertion-7
NF5283-Insertion-7
[»] chr3 (13 HSPs)
chr3 (8-130)||(46490661-46490783)
chr3 (48-130)||(46497940-46498022)
chr3 (13-130)||(46479747-46479864)
chr3 (13-130)||(46484005-46484122)
chr3 (11-130)||(46473884-46474003)
chr3 (16-130)||(45883786-45883900)
chr3 (48-106)||(47414268-47414326)
chr3 (16-117)||(16025441-16025542)
chr3 (57-126)||(46526480-46526549)
chr3 (61-130)||(51943895-51943964)
chr3 (57-125)||(45902955-45903023)
chr3 (8-130)||(46531871-46531993)
chr3 (67-126)||(5160285-5160344)
[»] chr4 (2 HSPs)
chr4 (48-98)||(35162431-35162481)
chr4 (48-98)||(35155410-35155460)
[»] chr8 (2 HSPs)
chr8 (48-126)||(9675751-9675829)
chr8 (48-126)||(9692773-9692851)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 8e-59; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 8e-59
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 46490661 - 46490783
Alignment:
Q  8 caattaaggttcccttcatgactagcaaggaagaacaacatattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataa 107  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46490661 caattaaggttcccttcatgactagcaaggaagaacaatatattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataa 46490760  T
Q  108 gcgtcaatttactatgtactttt 130  Q
    |||| ||||||||||||||||||    
T  46490761 gcgtgaatttactatgtactttt 46490783  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 46497940 - 46498022
Alignment:
Q  48 tattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagcgtcaatttactatgtactttt 130  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  46497940 tattagagatttcgatgattttaaagttcttggccttccttataagcaaggcgaagacaagcgtcaatttacgatgtactttt 46498022  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 46479747 - 46479864
Alignment:
Q  13 aaggttcccttcatgactagcaaggaagaa-caacatattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagcgt 111  Q
    ||||||||||||||||| |||||| ||||| ||   |||||||||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||    
T  46479747 aaggttcccttcatgaccagcaag-aagaagcagtttattagagcttttgatggttttaaagttctcggtcttccttataagcaaggcgaagataagcgt 46479845  T
Q  112 caatttactatgtactttt 130  Q
    ||||| || ||||||||||    
T  46479846 caattcaccatgtactttt 46479864  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 46484005 - 46484122
Alignment:
Q  13 aaggttcccttcatgactagcaaggaagaa-caacatattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagcgt 111  Q
    ||||||||||| |||||||||||| ||||| ||   |||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  46484005 aaggttccctttatgactagcaag-aagaagcagtttattagagcttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataagcgt 46484103  T
Q  112 caatttactatgtactttt 130  Q
    |  || |||||||||||||    
T  46484104 cgtttcactatgtactttt 46484122  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 46473884 - 46474003
Alignment:
Q  11 ttaaggttcccttcatgactagcaaggaagaa-caacatattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagc 109  Q
    |||||||| |||| |||||||||||| ||||| ||   |||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  46473884 ttaaggtttcctttatgactagcaag-aagaagcagtttattagagcttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataagc 46473982  T
Q  110 gtcaatttactatgtactttt 130  Q
    |||  || |||||||||||||    
T  46473983 gtcgtttcactatgtactttt 46474003  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 45883900 - 45883786
Alignment:
Q  16 gttcccttcatgactagcaaggaagaacaacatattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagcgtcaat 115  Q
    |||||||||||||| |||||| |||| |||  |||||||||||| |||| ||||||||| ||| |  | |||||| ||||||| | ||||||||||| ||    
T  45883900 gttcccttcatgaccagcaagaaagatcaatttattagagcttttgatggttttaaagtgctttgtatcccttatgagcaaggtggagataagcgtcgat 45883801  T
Q  116 ttactatgtactttt 130  Q
    |  ||||||||||||    
T  45883800 tctctatgtactttt 45883786  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 47414326 - 47414268
Alignment:
Q  48 tattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagata 106  Q
    |||| ||||||| |||||||||||||||||| |||||||||||||  |||| |||||||    
T  47414326 tattggagcttttgatgattttaaagttctttgccttccttataataaaggagaagata 47414268  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 16025441 - 16025542
Alignment:
Q  16 gttcccttcatgactagcaaggaagaacaacatattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagcgtcaat 115  Q
    |||||||||||||| ||||| || || |||  |||| | |||||||||||||| ||||| ||| | ||||| || |  ||||| ||||||||||||||||    
T  16025441 gttcccttcatgaccagcaacgaggatcaatttatttgtgctttcgatgatttcaaagtacttcgtcttccatacagacaaggtgaagataagcgtcaat 16025540  T
Q  116 tt 117  Q
    ||    
T  16025541 tt 16025542  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 46526549 - 46526480
Alignment:
Q  57 tttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagcgtcaatttactatgtac 126  Q
    |||||||| ||| ||||| ||  | ||||||||||||||||| |||||||||||||||||  ||||||||    
T  46526549 tttcgatggtttcaaagtactccgtcttccttataagcaaggagaagataagcgtcaattctctatgtac 46526480  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 51943895 - 51943964
Alignment:
Q  61 gatgattttaaagttcttggccttccttataagcaaggcgaagataagcgtcaatttactatgtactttt 130  Q
    ||||||||||||||||||   |||||||||||| |||| ||||||||||| |||||  ||||||| ||||    
T  51943895 gatgattttaaagttcttcatcttccttataagaaaggtgaagataagcgccaattctctatgtattttt 51943964  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 45902955 - 45903023
Alignment:
Q  57 tttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagcgtcaatttactatgta 125  Q
    |||||||| ||| ||||| ||| | ||||||||| ||||||| |||||||||||||||||  |||||||    
T  45902955 tttcgatggtttcaaagtacttcgtcttccttatgagcaaggagaagataagcgtcaattctctatgta 45903023  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 46531871 - 46531993
Alignment:
Q  8 caattaaggttcccttcatgactagcaaggaagaa-caacatattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagata 106  Q
    |||||||||||||||||||||||||||| |||||| ||   ||| |  ||||| |||| ||||||  | ||| | |||||||||||||||||| | ||||    
T  46531871 caattaaggttcccttcatgactagcaa-gaagaagcagtttataaatgcttttgatggttttaagatccttcgtcttccttataagcaaggcaacgata 46531969  T
Q  107 agcgtcaatttactatgtactttt 130  Q
      ||||||||  ||||||||||||    
T  46531970 ttcgtcaattctctatgtactttt 46531993  T

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Target: chr3; HSP #13
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 5160285 - 5160344
Alignment:
Q  67 tttaaagttcttggccttccttataagcaaggcgaagataagcgtcaatttactatgtac 126  Q
    |||||||||||| | ||||| |||||| ||||| |||||||||||| |||  ||||||||    
T  5160285 tttaaagttcttcgtcttccgtataagaaaggcaaagataagcgtccattctctatgtac 5160344  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 35162431 - 35162481
Alignment:
Q  48 tattagagctttcgatgattttaaagttcttggccttccttataagcaagg 98  Q
    |||||||||||| |||| ||||||||||||| | |||||||||||||||||    
T  35162431 tattagagcttttgatggttttaaagttcttcgtcttccttataagcaagg 35162481  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 35155410 - 35155460
Alignment:
Q  48 tattagagctttcgatgattttaaagttcttggccttccttataagcaagg 98  Q
    |||||||||||| |||| ||||||||||||| | ||||| |||||||||||    
T  35155410 tattagagcttttgatggttttaaagttcttcgtcttccgtataagcaagg 35155460  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 9675829 - 9675751
Alignment:
Q  48 tattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagcgtcaatttactatgtac 126  Q
    |||||||||||| |||| ||||||||| ||| | || |||||| ||||||| | ||||||||| |||||  ||||||||    
T  9675829 tattagagcttttgatggttttaaagtgctttgtctcccttatgagcaaggtggagataagcgacaattctctatgtac 9675751  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 9692851 - 9692773
Alignment:
Q  48 tattagagctttcgatgattttaaagttcttggccttccttataagcaaggcgaagataagcgtcaatttactatgtac 126  Q
    |||||||||||| |||| ||||||||||||| | |||||||||||  ||||  || ||||||| |||||  ||||||||    
T  9692851 tattagagcttttgatggttttaaagttcttcgtcttccttataattaaggaaaaaataagcgacaattctctatgtac 9692773  T

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