View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5283_high_2 (Length: 474)
Name: NF5283_high_2
Description: NF5283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5283_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 2 - 456
Target Start/End: Complemental strand, 40471848 - 40471403
Alignment:
| Q |
2 |
gcatgtcgaagaatattcagtactccttccgatcactactataaacaaatattccttattcaggtttattgaattattgatgtatctggtttacaatata |
101 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
40471848 |
gcatctcgatgaatattcagtactccttccgatcactactataaacaaatattccttattcacgtttattgaattattgatgtatctggtttataatata |
40471749 |
T |
|
| Q |
102 |
atgcagatagatcagtaatagtataaaccttgaaaaaggaatatttgattatactaatagcataaactagagctagctggggtgtacagtactgttggtc |
201 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| | |
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| T |
40471748 |
atgcagatagatcagtaatagtataaaccctgaaaaaggaatatttgataatactaatagcatagactagagctagctcgggtgtacagtactgttggcc |
40471649 |
T |
|
| Q |
202 |
cttgacgactgaggaggtggcggtggcggcgaaaccgtgttggaactggaattattgcccttaggatcaacaaactgatcccatatcatcttcttcacag |
301 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40471648 |
cttgacgactgaggaggtggcgg------cgaaaccgtgttggaactggaattattgcccttaggatcaacaaactgatcccacatcatcttcttcacag |
40471555 |
T |
|
| Q |
302 |
aacgtttctttgcagggaagacactcccattctttggtttgtgccatgcctctgtttgctctgttttcaccactccctccatatcactttgtgtactact |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40471554 |
aacgtttctttgcagggaagacactcccattctttggtttgtgccatgcctctgtttcctctgttttcaccactccctccatatcactttgtgtact--- |
40471458 |
T |
|
| Q |
402 |
actatagtggtatagcctcactctctctgtggacttaacttaggactgtgtagtt |
456 |
Q |
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| T |
40471457 |
actatagtggtatagcctcactctctctgtggactaaacttaggactgtgtagtt |
40471403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 223 - 369
Target Start/End: Complemental strand, 40491761 - 40491618
Alignment:
| Q |
223 |
ggtggcggcgaaaccgtgttggaactggaattattgcccttaggatcaacaaactgatcccatatcatcttcttcacagaacgtttctttgcagggaaga |
322 |
Q |
| |
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|||||||| ||||||||||| |||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
40491761 |
ggtggcggtgaaaccgtgtttgaactggaatta---cccttgtaattaacaatctgatcccatatcatcttcttcacagaacgtttctttggagggaata |
40491665 |
T |
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| Q |
323 |
cactcccattctttggtttgtgccatgcctctgtttgctctgttttc |
369 |
Q |
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|||| ||||||||||||||||||||||||||||||| | |||||||| |
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| T |
40491664 |
cacttccattctttggtttgtgccatgcctctgtttccactgttttc |
40491618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 223 - 373
Target Start/End: Complemental strand, 40481248 - 40481104
Alignment:
| Q |
223 |
ggtggcggcgaaaccgtgttggaactggaattattgcccttaggatcaacaaactgatcccatatcatcttcttcacagaacgtttctttgcagggaaga |
322 |
Q |
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||||| || ||||||||||| ||||||||| |||||||||||||||| || |||||| |||||||||||||| |||||||| ||||||||||||| |
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| T |
40481248 |
ggtggtggtgaaaccgtgtttgaactggaa------cccttaggatcaacaatcttatcccacatcatcttcttcaccgaacgtttatttgcagggaaga |
40481155 |
T |
|
| Q |
323 |
cactcccattctttggtttgtgccatgcctctgtttgctctgttttcacca |
373 |
Q |
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|||||||||| |||||||||||||||| |||||||| |||||||||||||| |
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| T |
40481154 |
cactcccattttttggtttgtgccatggctctgtttcctctgttttcacca |
40481104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 279 - 394
Target Start/End: Complemental strand, 40501651 - 40501536
Alignment:
| Q |
279 |
atcccatatcatcttcttcacagaacgtttctttgcagggaagacactcccattctttggtttgtgccatgcctctgtttgctctgttttcaccactccc |
378 |
Q |
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|||||||||||| | ||||||||| |||||||||||||||||||||||| |||||| |||||| ||||||||||||||| |||||||||||| |||||| |
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| T |
40501651 |
atcccatatcatttgcttcacagagcgtttctttgcagggaagacactcttattcttcggtttgggccatgcctctgtttcctctgttttcacaactccc |
40501552 |
T |
|
| Q |
379 |
tccatatcactttgtg |
394 |
Q |
| |
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| T |
40501551 |
tgcatatcactttgtg |
40501536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 30206618 - 30206538
Alignment:
| Q |
22 |
tactccttccgatcactactataaacaaatattcc-ttattcaggtttattgaattattgatgtatctggtttacaatata |
101 |
Q |
| |
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||||||||||| |||||| |||||||||||||||| || ||||| || ||||||| |||||||||||||||||| |||||| |
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| T |
30206618 |
tactccttccggtcactattataaacaaatattccttttttcagattcattgaataattgatgtatctggtttataatata |
30206538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 23471143 - 23471090
Alignment:
| Q |
41 |
tataaacaaatattccttattcaggtttattgaattattgatgtatctggttta |
94 |
Q |
| |
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||||| |||||||||||| |||||||| ||||||| | |||||||||| ||||| |
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| T |
23471143 |
tataagcaaatattcctttttcaggttcattgaataactgatgtatcttgttta |
23471090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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