View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5283_high_5 (Length: 316)
Name: NF5283_high_5
Description: NF5283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5283_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 24 - 289
Target Start/End: Complemental strand, 24489876 - 24489611
Alignment:
| Q |
24 |
taattatataattttagactaccaacaatttccactaaaagccaaattatacaactttaaattttaaaattaaaatactataactgcaagtttctatcta |
123 |
Q |
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| T |
24489876 |
taattatataattttagactaccaacgatttccactaaaagccaaattatataactttaaattttaaaattaaaatactatatctgcaagtttctatcta |
24489777 |
T |
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| Q |
124 |
tcatggattttcgttatttttcctcccgtacaaaatagcaatgcttaaataaggggtttgttaaaaaagttagtcctcaaaatttattatttggatgagt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24489776 |
tcatggattttcgttatttttcctcccgtacaaaatagcaatgcttaaaaaaggggtttgttaaaaaagttagtcctcaaaatttattatttggatgagt |
24489677 |
T |
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| Q |
224 |
ttgttgttaattctaatctacattgaagcaattcactgaagtagctaaaaatttcaagatcccaag |
289 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||| |
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| T |
24489676 |
ttgttgttaattctaatctacattgaagcaattcaatgaggtacctaaaaatttcaaaatcccaag |
24489611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 5047793 - 5047742
Alignment:
| Q |
247 |
tgaagcaattcactgaagtagctaaaaatttcaagatcccaagtgtagaaga |
298 |
Q |
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| T |
5047793 |
tgaagcaattcactgaagtagcagaaaatttcaagatcccaggtatagaaga |
5047742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 3261670 - 3261725
Alignment:
| Q |
247 |
tgaagcaattcactgaagtagctaaaaatttcaagatcccaagtgtagaagatgat |
302 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| || ||||||||||| |
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| T |
3261670 |
tgaatcaattcactgaagtagccgaaaatttcaagatcccatgtatagaagatgat |
3261725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 3413612 - 3413668
Alignment:
| Q |
247 |
tgaagcaattcactgaagtagctaaaaatttcaagatcccaagtgtagaagatgatg |
303 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| || | |||||||||| |
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| T |
3413612 |
tgaatcaattcactgaagtagcagaaaatttcaagatcccatgtatcgaagatgatg |
3413668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 3286070 - 3286125
Alignment:
| Q |
247 |
tgaagcaattcactgaagtagctaaaaatttcaagatcccaagtgtagaagatgat |
302 |
Q |
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|||| ||||||||||||||||| |||||||||||||| || || ||||||||||| |
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| T |
3286070 |
tgaatcaattcactgaagtagcagaaaatttcaagatcgcatgtatagaagatgat |
3286125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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