View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5283_low_1 (Length: 530)
Name: NF5283_low_1
Description: NF5283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5283_low_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 12 - 530
Target Start/End: Original strand, 29671092 - 29671610
Alignment:
| Q |
12 |
ttcttgcaaacacacgtcttaacgtgtgcggtttcaatttggttctcttcttgacccaaaaaacaaaacggagtgtgtgaatcaaaccaacaactaaaag |
111 |
Q |
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| T |
29671092 |
ttcttgcaaacacacgtcttaacgtgtgcagtttcaatttggttctcttcttgacccaaaaaacaaaacggagtgtgtgaatcaaaccaacaactaaaag |
29671191 |
T |
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| Q |
112 |
caatacgccccaagttacaacaacacgtgggtaacgcatgttgtaaacttgctgaataatatgataaggagtgaccaaaccctgagcaaacacgtacgtg |
211 |
Q |
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| T |
29671192 |
caaaacgccccaagttacaacaacacgtgggtaacgcatgttgtaaacttgctgaataatatgataaggagtgaccaaaccctgagcaaacacgtacgtg |
29671291 |
T |
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| Q |
212 |
agtgccatgaatgtgacagcgacggtcatagcgaatgtcaagacccacatcatgaccttattcttaagggggaatccactaataaggagaagcacaacac |
311 |
Q |
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| T |
29671292 |
agtgccatgaatgtgacagcgacggtcatagcgaatgtcaagacccacatcatgaccttattcttaagggggaatccactaataaggagaagcacaacac |
29671391 |
T |
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| Q |
312 |
cgagagaccaaaagaaagaaatggagttgtatgtcatgaactttatgaattcatgtggccaggcataagctaaaactgcagtgccggcttcacataaacc |
411 |
Q |
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| T |
29671392 |
cgagagaccaaaagaaagaaatggtgttgtatgtcatgaactttatgaattcatgtggccaggcataagctaaaactgcagtgccggcttcacataaacc |
29671491 |
T |
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| Q |
412 |
ataagtagtgcaattgagtcctccagtaagtgtattttcttgccaaacaccacctggtggacttattgcggcttgaaaagtcattgtggcaattacagtt |
511 |
Q |
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| T |
29671492 |
ataagtagtgcaattgagtcctccagtaagtgtattttcttgccaaacaccacctggtggacttattgcggattgaaaagtcattgtggcaattacagtt |
29671591 |
T |
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| Q |
512 |
gccaccagcatcaatgttc |
530 |
Q |
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| T |
29671592 |
gccaccagcatcaatgttc |
29671610 |
T |
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Back To:
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 513
Target Start/End: Complemental strand, 39949295 - 39949224
Alignment:
| Q |
442 |
tgtattttcttgccaaacaccacctggtggacttattgcggcttgaaaagtcattgtggcaattacagttgc |
513 |
Q |
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| T |
39949295 |
tgtatcttcttgccaaacaccgcctggtggacttattactgattgaaatgtcattgttgcgattacagttgc |
39949224 |
T |
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