View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5283_low_3 (Length: 438)
Name: NF5283_low_3
Description: NF5283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5283_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 27930634 - 27931047
Alignment:
| Q |
11 |
cagagatgggacaagtgtttt-gttaacttcttttccttataattgagcacaatatgcaagttagctactatatcggatcttcaatcattttcgacgaaa |
109 |
Q |
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| T |
27930634 |
cagagatgggacaagtgtttttgttaacttcttttccttataattgagcacaatatgcaagttagctactatatcggatcttcaatcattttcgacgaaa |
27930733 |
T |
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| Q |
110 |
ttatagctcacagcaaagcagaaacaaagtgtgtgttttataaaa-cgtgcatgttctaacaaattagagaaagaatgaagaagaatcgaaaatggctta |
208 |
Q |
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| T |
27930734 |
ttatagttcacagcaaagcagaaacaaagtgtgtgttttataaaaacgtgcatgttctaacaaattagagaaagaatgaacaagaatcgaaaatggctta |
27930833 |
T |
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| Q |
209 |
gctagtgacagatataaggatataagcttgatggtgacgtgcatgtgcatactgcgcaatttaagggcatgcaatgcaactttcaaactatacaccatgc |
308 |
Q |
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| T |
27930834 |
gctagtgccagatataaggatataggcttgatggtgacgtgcatgtgcatactgcgcaatttaagggcatgcaatgcaactttcaaactatacaccatgc |
27930933 |
T |
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| Q |
309 |
a-nnnnnnnnnnagggttacatcaagcatattcatggggtatacaattatttattcttccttgaccaaaaataaattatccatccaatatgatttacaat |
407 |
Q |
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| T |
27930934 |
atatttttttttagggttacatcaagcatattcatggggtataaaattatttattcttccttgaccaaaaataaattatccatccaatatgatttacaat |
27931033 |
T |
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| Q |
408 |
tatcatgtgccact |
421 |
Q |
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| T |
27931034 |
tatcatgtgccact |
27931047 |
T |
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