View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5283_low_4 (Length: 391)
Name: NF5283_low_4
Description: NF5283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5283_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 24 - 344
Target Start/End: Original strand, 53060070 - 53060390
Alignment:
| Q |
24 |
tctatctgaaagtctcacattgaaaacatcacacatattaatagtgtttatatggtggaggtgagactcttggggtgtatcccaaagattatctactttt |
123 |
Q |
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| T |
53060070 |
tctatctgaaagtctcacattgaaaacatcacacatactaatagtgtttatatggtagaggtgagactcttggggtgtatcccaaagattatctactttt |
53060169 |
T |
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| Q |
124 |
ataaactgaggagagtgcactcaaacataactccacacatgcgccatcatttatagggtcaaaacacccccacatttttagcacatgtaggttgtcaatt |
223 |
Q |
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| T |
53060170 |
ataaactgaggagagtgcactcaaacataacaccacacatgcgccatcctttatagggtcaaaacgcccccacttttttagcacatgtaggttgtcaagt |
53060269 |
T |
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| Q |
224 |
atctgttcgacgcaattttgaaatatttttctctgggtttctatcctcttacaagtggtcaagtatctggtgacgtcgtgtctgcattgcataattttgg |
323 |
Q |
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| T |
53060270 |
atctgttcgacgcaattttgagatatttttctctgggtttctatcctcttataagtggtcaagtatctggtgacgtcgtgtctgcattgtataattttgg |
53060369 |
T |
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| Q |
324 |
acagaatagtgaaacttagcg |
344 |
Q |
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| T |
53060370 |
acagaatagtgaaacttagcg |
53060390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 11040567 - 11040620
Alignment:
| Q |
32 |
aaagtctcacattgaaaacatcacacatattaatagtgtttatatggtggaggt |
85 |
Q |
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| T |
11040567 |
aaagtctcacattgaatgaatcacacacattagtagtgtttatatagtggaggt |
11040620 |
T |
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