View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5283_low_6 (Length: 316)

Name: NF5283_low_6
Description: NF5283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5283_low_6
NF5283_low_6
[»] chr1 (1 HSPs)
chr1 (2-300)||(38723347-38723641)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 2 - 300
Target Start/End: Original strand, 38723347 - 38723641
Alignment:
Q  2 tgtctctatttacttataaatgagggttagtttggtaaatggcaatgagtattaacatttaatgtgtatctatatatttatgtgtgtatgaccttatata 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||      
T  38723347 tgtctctatttacttataaatgagggttagtttggtaaatggcaatgagcattaacatttaatgtgtatctatatatttatgtgtgtatgaccttata-- 38723444  T
Q  102 tattctagtgcactgtcttgaaacaaatcgcatagtaatattatatactaatattagcattatggttccaagaaggtgtttccaccttattttgttggtt 201  Q
      |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38723445 --ttctagtgcactgtcttgaaacaaatcgtatagtaatattatatactaatattagcattatggttccaagaaggtgtttccaccttattttgttggtt 38723542  T
Q  202 ctttcatgtttatgcttcagctgcagatcagaaatggagtctgattttgacaaatggataacatggaacgtcaagaattaccagagaaagaccattatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38723543 ctttcatgtttatgcttcagctgcagatcagaaatggagtctgattttgacaaatggatatcatggaacgtcaagaattaccagagaaagaccattatg 38723641  T

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