View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5283_low_7 (Length: 239)
Name: NF5283_low_7
Description: NF5283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5283_low_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 29671875 - 29671654
Alignment:
| Q |
18 |
ttcacaactttggagatgttagagccctggccaagagattttataagccttaaaattgaagaaatgttaactgaatccggtgttttaagacaagtatata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29671875 |
ttcacaactttggagatgttagagccctggccaagagattttataagccttaaaattgaagaaatgttaactgaatccggtgttttaagacaagtatata |
29671776 |
T |
|
| Q |
118 |
tgaattccacgccgcaacaacatgcagcatcaccaagcatggctagtcaagaacaaccaaatcaatctactaatcaagaacatccaaatgaaagaaggaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29671775 |
tgaattccacgccgcaacaacatgcagcatcaccaagcatggctagtcaagaacaaccaaatcaatctactaatcaagaacatccaaatgaaagaaggaa |
29671676 |
T |
|
| Q |
218 |
gacgtgggaaaacttttggtcc |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29671675 |
gacgtgggaaaacttttggtcc |
29671654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University