View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284-Insertion-6 (Length: 296)
Name: NF5284-Insertion-6
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284-Insertion-6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 296
Target Start/End: Complemental strand, 39544114 - 39543826
Alignment:
| Q |
7 |
aggtttgggaccactctgtatatagtatagattataaagtgttttaatcgtcattgttactatgcagacaacatggatgaaatgtggtggattagtagtg |
106 |
Q |
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| T |
39544114 |
aggtttgggaccgctttgtatatagtatagattataa-gtgttttaatcgtcattgttactatgcagacaacatggatgaaatgtggtggattagtagtg |
39544016 |
T |
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| Q |
107 |
gcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttccttgtatcttgggccgagatagctcggcccaatgataacaagtctttga |
206 |
Q |
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| T |
39544015 |
gcttgcacttttgaccatcgtatagcggacgcatattctgcaaacatgttccttgtatcatgggccgagatagctcgacccaacaataacaagtctttga |
39543916 |
T |
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| Q |
207 |
tcccaataacgcaaccttgttttagacggtcacttatgaccccacgacgcccaccttccatacatccttcactttatgacatgtatgtcc |
296 |
Q |
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| T |
39543915 |
tcccaacaatgcaaccttgttttagacggtcacttatgaccccacgacgcccaccttccatacatccttcactttatgacatgtatgtcc |
39543826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 44 - 296
Target Start/End: Complemental strand, 39554097 - 39553845
Alignment:
| Q |
44 |
agtgttttaatcgtcattgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatatt |
143 |
Q |
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| T |
39554097 |
agtgttttaattatcattgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctatt |
39553998 |
T |
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| Q |
144 |
cagcaaacatgttccttgtatcttgggccgagatagctcggcccaatgataacaagtctttgatcccaataacgcaaccttgttttagacggtcacttat |
243 |
Q |
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| T |
39553997 |
ctgcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttct |
39553898 |
T |
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| Q |
244 |
gaccccacgacgcccaccttccatacatccttcactttatgacatgtatgtcc |
296 |
Q |
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| T |
39553897 |
gaccccacgacgcccaccttccatccatccttcaatttatgacatgtatgtcc |
39553845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 60 - 291
Target Start/End: Complemental strand, 39587191 - 39586960
Alignment:
| Q |
60 |
ttgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttcct |
159 |
Q |
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| T |
39587191 |
ttgtaactgtgcaggcaacttggatgaaatgtggtgggttagtagtggcgtgcaattttgaccatcgaatagccgacgcctattctgcaaacatgtttct |
39587092 |
T |
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| Q |
160 |
tgtatcttgggccgagatagctcggcccaatgataacaagtctttgatcccaataacgcaaccttgttttagacggtcacttatgaccccacgacgccca |
259 |
Q |
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| T |
39587091 |
tgtatcatgggccgagatagcccgatcgagcaataacaagtctttgatcccaacaacacaaccttgttttcaaaggtcccttctgaccccaagacaccca |
39586992 |
T |
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| Q |
260 |
ccttccatacatccttcactttatgacatgta |
291 |
Q |
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| T |
39586991 |
ccttccatccatccttcactctatgacatgta |
39586960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 17503870 - 17503782
Alignment:
| Q |
89 |
tgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttccttgtatcttgggccgagat |
177 |
Q |
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| T |
17503870 |
tgtggtgggatagtagtggcatgcacatttgatcatcgcatagcagatgcatattcaacaaacatgttcctagtatcatgggccgagat |
17503782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 17475735 - 17475654
Alignment:
| Q |
101 |
gtagtggcttgcacttttgaccatcgtatagcggacgcatattcagcaaacatgttccttgtatcttgggccgagatagctc |
182 |
Q |
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| T |
17475735 |
gtagtggcatgcacatttgatcatcgcatagcagatgcctactcaacaaacatgttcttagtatcatgggccgagatggctc |
17475654 |
T |
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