View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284-Insertion-7 (Length: 241)
Name: NF5284-Insertion-7
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284-Insertion-7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 8480475 - 8480709
Alignment:
| Q |
7 |
aaaacaaaactcaccgagaagtaacatttaactgatggcacccaagtattagagctaccagtatcaaaaatcacagtaaaagtctgaggaggagtaccaa |
106 |
Q |
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| T |
8480475 |
aaaacaaaactcaccgagaagtaacatttaactgatggcacccaagtattagagctaccagtatcgaaaatcacagtaaaagtctgaggaggagtaccaa |
8480574 |
T |
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| Q |
107 |
tggatatttcaccatagtactgagcatccaagtaattcttcaatgcaacaacatcagcttctccagctcctccaaggatgtttttggaagcataattcct |
206 |
Q |
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| T |
8480575 |
tggatatttcaccatagtactgagcatccaagtaattcttcaatgcaacaacatcagcttctccagctcctccaaggatgtttttggaagcataattcct |
8480674 |
T |
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| Q |
207 |
aatggaagaccatgatgattcacaacccttcgacc |
241 |
Q |
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| T |
8480675 |
aatggaagaccatgatgattcacaacccttcgacc |
8480709 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 55356718 - 55356832
Alignment:
| Q |
54 |
attagagctaccagtatcaaaaatcacagtaaaagtctgaggaggagtaccaatggatatttcaccatagtactgagcatccaagtaattcttcaatgca |
153 |
Q |
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| T |
55356718 |
attagagctgccagtatcgaaaatgacagtgaacttctgaggagaggtaccaatggatatttcaccatagtattgagcatctaagtaattcttcaaagca |
55356817 |
T |
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| Q |
154 |
acaacatcagcttct |
168 |
Q |
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| T |
55356818 |
acaatatcagtttct |
55356832 |
T |
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