View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284_high_1 (Length: 974)
Name: NF5284_high_1
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 760 - 966
Target Start/End: Original strand, 16201422 - 16201628
Alignment:
| Q |
760 |
atgaatcataaataaagaaatgaagtcacaaagtactaaccttgagttgattcattttcccctggtttcccaaaccaagatccaacagtttctttaacca |
859 |
Q |
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| T |
16201422 |
atgaatcataaataaagaaatgaagtcacaaagtactaaccttgagttgattcattttcccctggtttcccaaaccaagatccaacagtttccttaacca |
16201521 |
T |
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| Q |
860 |
tatcaaccatacctttaccaaactccccatctttaatctcatcatcccaacctcctaacctcctcttcacttcttcactctcagtcaccttccctcttgg |
959 |
Q |
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| T |
16201522 |
tatcaaccatacctttaccaaactccccatctttaatctcatcatcccaacctcctaacctcctcttcacttcttcactctcagtcaccttccctcttgg |
16201621 |
T |
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| Q |
960 |
cctatgc |
966 |
Q |
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||||||| |
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| T |
16201622 |
cctatgc |
16201628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 187 - 432
Target Start/End: Original strand, 16200771 - 16201006
Alignment:
| Q |
187 |
tcatgtagtaagattgagttaattatcacgatcacatactaagtacctattatgtgaaactaaactattaaacaatatgaatacagattccaatacacca |
286 |
Q |
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| T |
16200771 |
tcatgtagtaagattgagttaattatcacgatcacatactaagtacctattatttgaaacttaactattatgcaatatgaatacagattccaatacacaa |
16200870 |
T |
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| Q |
287 |
cataggaacattgtaagtcattagatgtagaaatgtatcaaaccacctcagatatacatccaataatagtcttggaatttagctgagactaaaataaaca |
386 |
Q |
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| T |
16200871 |
cataggaacattgtaagtcattagatgtagaaatgtatcaaaccacctcagatatacaccc---aatagtcttgaaatatagctttga-------aagca |
16200960 |
T |
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| Q |
387 |
tccaaatattataataaacttatagtaacacagtcttgtagtctcc |
432 |
Q |
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| T |
16200961 |
ttcaaacattataataaacttatagtaacacagttttgtagtctcc |
16201006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 509 - 754
Target Start/End: Original strand, 16201083 - 16201310
Alignment:
| Q |
509 |
taattatgataattcacagaagaaaccaattcttcaatgagctgaatcctgaagtcttctttcacctgcagcttgatgaacctgtccaacttcagcacca |
608 |
Q |
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| T |
16201083 |
taattatgataattcacagaagaaaccaattcttcaatgagctgaatcctgaagtcttctttcacctgcagtttgatgaacctgtccaacctcagcacca |
16201182 |
T |
|
| Q |
609 |
gtattcctaggcattccttcacttcctacaa----acaaattaaaaatcaaaggtcacactttttaccagattgtgtaaactgtaatctatgaatgtctc |
704 |
Q |
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| T |
16201183 |
gtattcctaggcattccttcacttcctacaataacacaaattaaaaatcaaaggtcacactttttac----------------------atgaatgtatc |
16201260 |
T |
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| Q |
705 |
aaaatcacagcaaaacacttgtacaaactcttcctagtctattagtttta |
754 |
Q |
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| T |
16201261 |
aaaattacagcaaaacacttgtacaaactcttcttagtctattagtttta |
16201310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 16198791 - 16198875
Alignment:
| Q |
79 |
gaaatgcaagtgaatttggtgcttcaacaggagaatcctatgaggcaagtctttgtaagtgttgtgttgtcttggttgtatatcaa |
164 |
Q |
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| T |
16198791 |
gaaatgcaagtggatttggtgttacaacagtagagtcctatgaggcaagtctt-gtaagtgttgtgttgtcttggttgtatatcaa |
16198875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 32669070 - 32669204
Alignment:
| Q |
18 |
gttctgtatctaggatcaggttctagtgttgttttggtgtcgaagagacgcatctagggtggaaatgcaagtgaatttggtgcttcaacaggagaatcct |
117 |
Q |
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| T |
32669070 |
gttctgtttttaggatcatgttctggtgttgtattggtgtcgaagagacgggacttgggaggaattgcaagtggtttttgtgctagaagagcataatcct |
32669169 |
T |
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| Q |
118 |
atgaggcaagtctttgtaagtgttgtgttgtcttg |
152 |
Q |
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| T |
32669170 |
ttgaggcaagtctttgtaagtgttgcattgtcttg |
32669204 |
T |
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