View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5284_high_10 (Length: 444)
Name: NF5284_high_10
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 21 - 345
Target Start/End: Original strand, 43187966 - 43188280
Alignment:
| Q |
21 |
aattgaattcatattgtgacctccactgatatctttcaattcatgaagaaaaatggaatggaatacaatgagacgaaatttgagaggatttgattgtcga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43187966 |
aattgaattcatattgtgacctccactgatatctttcagttcatgaagaaaaatggaatggaatacaatgagacgaaatttgagaggatttgattgtcga |
43188065 |
T |
|
| Q |
121 |
aggtctgtttttctcaacatcatcgttgttacaactagaaagcatttagtgactcttactgagctacttgtcttatatctcggtgctcaactgctggatt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43188066 |
aggtctgtttttctcaacatcatcgttgttacaactagaaagcatttagtgactcttattgagctacttgtcttatatctcggtgctcaactgctgga-- |
43188163 |
T |
|
| Q |
221 |
ttgtgtattttttggtgattctttcatcagttagcgttcaataaaacatgttagcatcatttgttcctatttggaatccggatggatatagggatctagc |
320 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43188164 |
--------tttttggtgattctttcatcagttggcgttcaataaaacatgttagcatcatttgttcctatttggaatccggatggatatagggatctagc |
43188255 |
T |
|
| Q |
321 |
ttccattccaccacttctgaaatcc |
345 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
43188256 |
ttccattccaccacttctgaaatcc |
43188280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 43188281 - 43188334
Alignment:
| Q |
391 |
caccagcactcctttactgttatagtcggtctttgtgtcacatcacggccaacc |
444 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43188281 |
caccagcactcctttactgtgatagtcggtctttgtgtcacatcacggccaacc |
43188334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University