View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284_high_15 (Length: 345)
Name: NF5284_high_15
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 5245692 - 5245803
Alignment:
| Q |
53 |
aaacaggaaaacaaaatatacgtcattctgcattgaaatataatgtgtcaaatactagattatgggtgattcagtaaatgtttataaagaggtataatct |
152 |
Q |
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| T |
5245692 |
aaacacgaaaacaaaatatacgtcattccgcattgagatataatgtgtcaaatattaggtgatgggtgatttagtaaatgtttataaagaggtataatct |
5245791 |
T |
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| Q |
153 |
aatgcaaattat |
164 |
Q |
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| T |
5245792 |
aatgcaaattat |
5245803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 5245818 - 5245919
Alignment:
| Q |
152 |
taatgcaaattataataaatgaaccgaacacatgtaaaggtaaaaactaaaataaccaaacacgaaaataaattaca-tttttaatttgattattggtta |
250 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||| |
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| T |
5245818 |
taatgcaaattataataaatcaaccgaacacatgtaaaggtgaaaactaaaataaccaaacacgaaaacaatttacattttttaatttgattattagtta |
5245917 |
T |
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| Q |
251 |
gt |
252 |
Q |
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|| |
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| T |
5245918 |
gt |
5245919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 11232326 - 11232240
Alignment:
| Q |
203 |
ataaccaaacacgaaaataaattacatttttaatttgattattggttagtagtgtgaaaactaagtcacgatgtattcgtctaggac |
289 |
Q |
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| T |
11232326 |
ataatcaaacacaaaaataaattacatttttaatttgattattggttagtagtgtgaaaactaagtcacgatgtattcctctaggac |
11232240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3026543 - 3026592
Alignment:
| Q |
1 |
atcacacattcccaatttcaaacgctcaataacaggtttgaacttgctct |
50 |
Q |
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| T |
3026543 |
atcacacattcccaatttgaaacgctcaataacacgtttgaacgtgctct |
3026592 |
T |
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