View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284_high_19 (Length: 324)
Name: NF5284_high_19
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 130 - 311
Target Start/End: Original strand, 45794337 - 45794518
Alignment:
| Q |
130 |
taacattattctatttatgaaagaaaaaaccagattcatatggaatgcctgtatttgtcaaccattggtttgcttgaataaactcagcagctgtaaaact |
229 |
Q |
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| T |
45794337 |
taacattattctatttatgaaagaaaaaaccagattcatatggaatgcctgtatttgtcaaccattggtttgcttgaataaactcagcagctgtaaaact |
45794436 |
T |
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| Q |
230 |
catcatttcacttttccaattctgagaatttgttctataactctcccaatgaaccctcatatcatttcttgcaccagggcct |
311 |
Q |
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| T |
45794437 |
catcatttcacttttccaattctgagaatttgttctataactctcccaatgaaccctcatatcatttcttgcaccagggcct |
45794518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 45794229 - 45794267
Alignment:
| Q |
8 |
caatttgtggacagaataaattaacactgtgacattcaa |
46 |
Q |
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| T |
45794229 |
caatttgtggacagaataaattaacactgtgacattcaa |
45794267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 45794283 - 45794323
Alignment:
| Q |
63 |
ggttaagactgtgacattca-tttaatgactactatccgtc |
102 |
Q |
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| T |
45794283 |
ggttaagactgtgacattcaatttaatgactactatccgtc |
45794323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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