View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284_high_20 (Length: 323)
Name: NF5284_high_20
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 43188082 - 43188280
Alignment:
| Q |
16 |
acatcatcgttgttacaactagaaagcatttagtgactcttactgagctacttgtcttatatctcggtgctcaactgctggattttgtgtattttttggt |
115 |
Q |
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| T |
43188082 |
acatcatcgttgttacaactagaaagcatttagtgactcttattgagctacttgtcttatatctcggtgctcaactgctggatttt----------tggt |
43188171 |
T |
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| Q |
116 |
gattctttcatcagttagcgttcaataaaacatgttagcatcatttgttcctatttggaatccggatggatatagggatctagcttccattccaccactt |
215 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43188172 |
gattctttcatcagttggcgttcaataaaacatgttagcatcatttgttcctatttggaatccggatggatatagggatctagcttccattccaccactt |
43188271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 43188281 - 43188334
Alignment:
| Q |
270 |
caccagcactcctttactgttatagtcggtctttgtgtcacatcacggccaacc |
323 |
Q |
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| T |
43188281 |
caccagcactcctttactgtgatagtcggtctttgtgtcacatcacggccaacc |
43188334 |
T |
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