View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5284_high_21 (Length: 322)
Name: NF5284_high_21
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_high_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 72064 - 72351
Alignment:
| Q |
17 |
tctaacaaaaacaaatttagttttttattgctgcaaggagcctcttttaaaagactccgtctaatttagcttttgtgatgctacgaagctttttggaaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
72064 |
tctaacaaaaacaaatttagttttttattgctgcaaggagcctcttttaaaagactttgtctaatttagcttttgtgatgcaacgaggctttttggaaga |
72163 |
T |
|
| Q |
117 |
ctttgtttaatgtgggcaaagaaaaataataaatagtacttgatga---attattattttagtgatttattgtcggatcaataaatcacatcatatctta |
213 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
72164 |
ctttgtttaatgtgggcaaagtaaaat----aatagtacttgatgaattattattattttagtgatttattgtcggatcaataaatcacgacatatctta |
72259 |
T |
|
| Q |
214 |
tttaatctaatgatgaattttattaatctaaacacataaattaatgtgtacatgatgatgtaagacttattttacttgtgcaccatagaattaat |
308 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
72260 |
tttgatctaatgatgaattttattaatctaaacatataaattaatgtgtac---atgatgtaagacttatcttacttgtgtaccatagaattaat |
72351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 45806881 - 45806936
Alignment:
| Q |
189 |
gatcaataaatcacatcatatcttatttaatctaatgatgaattttattaatctaa |
244 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||||| |||||| |||||| |
|
|
| T |
45806881 |
gatcaataaatcacatcatgttttatttaatttaatgatgagatttattgatctaa |
45806936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 27925353 - 27925401
Alignment:
| Q |
189 |
gatcaataaatcacatcatatcttatttaatctaatgatgaattttatt |
237 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||| ||||| |||||| |
|
|
| T |
27925353 |
gatcaataaatcacatcatatctcattttatttaatcatgaaatttatt |
27925401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 36291868 - 36291827
Alignment:
| Q |
188 |
ggatcaataaatcacatcatatcttatttaatctaatgatga |
229 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
36291868 |
ggatcaataaatcacatcatatatcatttaatttaatgatga |
36291827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 21135944 - 21135896
Alignment:
| Q |
193 |
aataaatcacatcatatcttatttaatctaatgatgaattttattaatc |
241 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||| || |||||||||| |
|
|
| T |
21135944 |
aataaatctcatcatatcttatttgatccaatgataaaatttattaatc |
21135896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 42984315 - 42984367
Alignment:
| Q |
192 |
caataaatcacatcatatcttatttaatctaatgatgaattttattaatctaa |
244 |
Q |
| |
|
|||| ||||||||||||| ||||||||| ||||||| || |||||| |||||| |
|
|
| T |
42984315 |
caatgaatcacatcatatattatttaatttaatgataaaatttattgatctaa |
42984367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University