View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5284_high_33 (Length: 226)

Name: NF5284_high_33
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5284_high_33
NF5284_high_33
[»] scaffold0531 (1 HSPs)
scaffold0531 (154-226)||(9704-9776)
[»] chr2 (14 HSPs)
chr2 (154-226)||(5163795-5163867)
chr2 (1-78)||(34909206-34909283)
chr2 (154-226)||(28556659-28556731)
chr2 (116-197)||(34909321-34909402)
chr2 (154-226)||(30257834-30257907)
chr2 (177-226)||(18830051-18830100)
chr2 (154-226)||(28148892-28148963)
chr2 (159-226)||(38561845-38561912)
chr2 (175-226)||(40877000-40877051)
chr2 (183-226)||(4206645-4206688)
chr2 (183-226)||(17271346-17271389)
chr2 (183-226)||(34909422-34909465)
chr2 (154-208)||(16547683-16547739)
chr2 (161-226)||(18197341-18197405)
[»] chr6 (11 HSPs)
chr6 (154-226)||(12174323-12174395)
chr6 (161-226)||(9815733-9815798)
chr6 (154-226)||(10668933-10669004)
chr6 (154-226)||(34573240-34573314)
chr6 (172-226)||(34969399-34969453)
chr6 (166-226)||(34540926-34540986)
chr6 (183-226)||(4337974-4338017)
chr6 (154-226)||(31787818-31787890)
chr6 (185-226)||(6274016-6274057)
chr6 (173-226)||(13229310-13229363)
chr6 (30-75)||(34573108-34573153)
[»] chr4 (17 HSPs)
chr4 (154-226)||(23870050-23870122)
chr4 (154-224)||(7853300-7853370)
chr4 (154-226)||(12320406-12320479)
chr4 (154-223)||(43515911-43515980)
chr4 (154-226)||(3643199-3643270)
chr4 (173-226)||(36071630-36071683)
chr4 (151-207)||(40807921-40807977)
chr4 (175-226)||(29118474-29118525)
chr4 (151-226)||(55147877-55147952)
chr4 (185-226)||(38087662-38087703)
chr4 (154-226)||(2113842-2113914)
chr4 (174-226)||(15986944-15986996)
chr4 (183-226)||(6137207-6137250)
chr4 (175-226)||(47059693-47059744)
chr4 (175-226)||(47082058-47082109)
chr4 (172-226)||(4596531-4596585)
chr4 (192-226)||(35372195-35372229)
[»] chr8 (12 HSPs)
chr8 (161-226)||(28376660-28376725)
chr8 (154-226)||(22930324-22930396)
chr8 (154-223)||(34142030-34142099)
chr8 (154-226)||(13580412-13580484)
chr8 (154-226)||(4350722-4350797)
chr8 (173-226)||(26835667-26835720)
chr8 (183-226)||(13236166-13236210)
chr8 (183-226)||(21348437-21348480)
chr8 (185-226)||(12181826-12181867)
chr8 (185-226)||(12426254-12426295)
chr8 (154-226)||(22486649-22486721)
chr8 (185-225)||(43872482-43872522)
[»] chr1 (8 HSPs)
chr1 (154-226)||(1240430-1240502)
chr1 (154-226)||(8246774-8246846)
chr1 (159-226)||(29664194-29664261)
chr1 (154-226)||(33735804-33735876)
chr1 (175-226)||(3265540-3265591)
chr1 (185-226)||(30717893-30717934)
chr1 (172-217)||(52805931-52805976)
chr1 (153-197)||(35405368-35405412)
[»] chr7 (17 HSPs)
chr7 (154-222)||(12177813-12177883)
chr7 (166-226)||(35812617-35812677)
chr7 (154-211)||(26912345-26912402)
chr7 (154-226)||(22318718-22318789)
chr7 (154-226)||(26914397-26914469)
chr7 (173-226)||(3940724-3940777)
chr7 (156-217)||(42336001-42336062)
chr7 (186-226)||(15134537-15134577)
chr7 (154-226)||(33480544-33480616)
chr7 (175-226)||(21292805-21292856)
chr7 (183-226)||(30095843-30095886)
chr7 (154-224)||(21129381-21129451)
chr7 (31-69)||(26912495-26912533)
chr7 (186-224)||(40351854-40351892)
chr7 (192-226)||(49164858-49164892)
chr7 (193-226)||(37996512-37996545)
chr7 (178-226)||(31329665-31329713)
[»] chr3 (11 HSPs)
chr3 (159-226)||(33510156-33510223)
chr3 (154-226)||(15670921-15670993)
chr3 (154-218)||(33682716-33682780)
chr3 (175-226)||(2758078-2758129)
chr3 (159-226)||(54417081-54417148)
chr3 (185-226)||(42417929-42417970)
chr3 (183-226)||(11383594-11383637)
chr3 (155-226)||(19149905-19149976)
chr3 (183-224)||(18257969-18258010)
chr3 (185-226)||(27541153-27541194)
chr3 (173-226)||(52706734-52706787)
[»] chr5 (11 HSPs)
chr5 (177-226)||(7887264-7887313)
chr5 (154-226)||(16570550-16570622)
chr5 (154-222)||(32257739-32257807)
chr5 (175-226)||(502808-502858)
chr5 (183-226)||(10325715-10325758)
chr5 (154-226)||(3193576-3193648)
chr5 (154-226)||(3596966-3597038)
chr5 (178-226)||(39542413-39542461)
chr5 (187-226)||(12263735-12263774)
chr5 (175-226)||(16569375-16569426)
chr5 (154-226)||(20870637-20870705)
[»] scaffold0777 (1 HSPs)
scaffold0777 (154-226)||(5849-5920)


Alignment Details
Target: scaffold0531 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 9776 - 9704
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9776 aatataattaatcaaaccgaattaaaaagatatatatctatatagtactaactactaaataaaaataataatt 9704  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 5163867 - 5163795
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5163867 aatataattaatcaaaccgaattaaaaagatatatatttatatagtactaactactaagtaaaaataataatt 5163795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 34909206 - 34909283
Alignment:
Q  1 tttagtgattttgacttaagagtcaagaatcggtcctaagatttttgatgtcttaggcaaaataataaaattgtgtcc 78  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||    
T  34909206 tttagtgatgttgacttaaaagtcaagaatgggtcctaagatttttgatgtcttaggcaaaacaataaaattttgtcc 34909283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 28556659 - 28556731
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| ||||||||||| ||| || || |||||||||||||||||||||||||||||||||||||||    
T  28556659 aatataattaatcaaaccgaatttaaacgaaatgtatctatatagtactaactactaagtaaaaataataatt 28556731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 34909321 - 34909402
Alignment:
Q  116 gttgcaaaatattcatttatagtcaaagnnnnnnnaaaaatataattaaccaaaccgaattaaaaagatatatatctatata 197  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| | |||||||| ||||||    
T  34909321 gttgcaaaatattcatttatagtcaaagtttttttaaaaatataattaaccaaaccgaattaaatatatatatatatatata 34909402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 30257834 - 30257907
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctata-tagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| ||||||||||| |||||| ||||||||||| ||||| |||||| |||||||||| |||||||    
T  30257834 aatataattaatcaaaccgaattgaaaagaaatatatctatattagtattaactattaagtaaaaaaaataatt 30257907  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 18830051 - 18830100
Alignment:
Q  177 aaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  18830051 aaaaagaaatatatctatatagtactacccactaagtaaaaataataatt 18830100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 28148963 - 28148892
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| |||| ||||||||||| |||||||||| ||||||||||| |||||  ||||| ||||||||    
T  28148963 aatataattaatcaaaacgaattaaaaa-atatatatctctatagtactaattactatataaaagtaataatt 28148892  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 38561912 - 38561845
Alignment:
Q  159 aattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||| |||| | ||||||||||| || ||||||||| ||| |||||||||| ||||||||||||||    
T  38561912 aattaatcaaaacaaattaaaaagaaatgtatctatattgtaataactactaaataaaaataataatt 38561845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 40877000 - 40877051
Alignment:
Q  175 ttaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||| |||||| |||||| |||||||||| |||||||||||||||||    
T  40877000 ttaaaaagaaatatatttatataatactaactaccaagtaaaaataataatt 40877051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 4206645 - 4206688
Alignment:
Q  183 atatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||| |||||| |||||||||||||||||| |||||||||    
T  4206645 atatatatatatatattactaactactaagtaaatataataatt 4206688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 17271346 - 17271389
Alignment:
Q  183 atatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||||||  |||| |||||||||||||||||||||||    
T  17271346 atatatatctatattatactgactactaagtaaaaataataatt 17271389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 34909422 - 34909465
Alignment:
Q  183 atatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||| |||||| ||||||||| ||||||||||||||||||    
T  34909422 atatatatatatatattactaactagtaagtaaaaataataatt 34909465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 16547739 - 16547683
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaaga--tatatatctatatagtactaactac 208  Q
    ||||||||||| |||||| ||||||||| |  |||||||||||||||||| ||||||    
T  16547739 aatataattaatcaaaccaaattaaaaaaaaatatatatctatatagtaccaactac 16547683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 18197405 - 18197341
Alignment:
Q  161 ttaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||| ||| ||||||||| |||||| || ||| |||||||||  |||||||||||||||||    
T  18197405 ttaaccaaaacgagttaaaaagaaatatatgta-ataatactaactatcaagtaaaaataataatt 18197341  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 12174395 - 12174323
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12174395 aatataattaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataatt 12174323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 9815733 - 9815798
Alignment:
Q  161 ttaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  9815733 ttaatcaaagcgaattaaaaagaaatatatctatatagtattaactactaagtaaaaataataatt 9815798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 10668933 - 10669004
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| ||||  ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  10668933 aatataattaatcaaat-gaattcaaaagatatatatctatataatactaactaataagtaaaaataataatt 10669004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 34573240 - 34573314
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaaga--tatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||| ||||||||||||||||||  |||||||||||||| || |||||||||| ||||||||||||||    
T  34573240 aataaaattaatcaaaccgaattaaaaagaaatatatatctatataatattaactactaaataaaaataataatt 34573314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 34969453 - 34969399
Alignment:
Q  172 gaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||    
T  34969453 gaattaaaaataaatatatctatatagtaccaactactaagtaaaaataataatt 34969399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 34540926 - 34540986
Alignment:
Q  166 caaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| ||| |||| |||| |||||||||||||||| ||| |||||||||||||||||||||    
T  34540926 caaaacgagttaataagaaatatatctatatagtattaattactaagtaaaaataataatt 34540986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 4337974 - 4338017
Alignment:
Q  183 atatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  4337974 atatatatatatatagtactaactactaagtaaaagtaataatt 4338017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 31787890 - 31787818
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||| |||| ||||||||||| | |||||||||  || ||||||||| |||||| |||||||||||    
T  31787890 aatagaattaatcaaagcgaattaaaaataaatatatctacttaatactaactattaagtacaaataataatt 31787818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 6274016 - 6274057
Alignment:
Q  185 atatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||| |||||| ||||||||||||||| ||||||||||||    
T  6274016 atatatgtatataatactaactactaagttaaaataataatt 6274057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 13229363 - 13229310
Alignment:
Q  173 aattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| || | ||||||| ||||  |||||||||||||||||||||||    
T  13229363 aattaaaaagaaatttttctatattgtaccgactactaagtaaaaataataatt 13229310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 34573108 - 34573153
Alignment:
Q  30 tcggtcctaagatttttgatgtcttaggcaaaataataaaattgtg 75  Q
    |||||| |||||||||||||||| ||| ||||| ||||||||||||    
T  34573108 tcggtcttaagatttttgatgtcctagacaaaacaataaaattgtg 34573153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 23870122 - 23870050
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23870122 aatagaattaatcaaaacgaattaaaaaaatatatatctatatagtactaactactaagtaaaaataataatt 23870050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 7853370 - 7853300
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataa 224  Q
    ||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7853370 aatatcattaatcaaactgaattaaaaggatatatatctatatagtactaactactaagtaaaaataataa 7853300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 12320479 - 12320406
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaa-taataatt 226  Q
    ||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  12320479 aatataattaatcaaaccgaattaaaaagatatatatctatattatactaactactaagtaaaaagtaataatt 12320406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 43515911 - 43515980
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataata 223  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  43515911 aatataattaatcaaaccaaattaaaaagatatatatctatataatactaactaataagtaaaaaaaata 43515980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 3643199 - 3643270
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| |||  | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  3643199 aatataattaatcaatgcaaattaaaaagaaatatatctatatagtactaactactaagt-aaaataataatt 3643270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 36071630 - 36071683
Alignment:
Q  173 aattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  36071630 aattaaaaagaaatatatctatatagtactaactatcaagtaaaaataataatt 36071683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 40807921 - 40807977
Alignment:
Q  151 aaaaatataattaaccaaaccgaattaaaaagatatatatctatatagtactaacta 207  Q
    ||||||| |||||| |||| ||||||||||||| ||||||||||||| |||||||||    
T  40807921 aaaaatagaattaatcaaagcgaattaaaaagaaatatatctatataatactaacta 40807977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 29118525 - 29118474
Alignment:
Q  175 ttaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||| |||||||||| |||||||||||||||  ||||||||||||||    
T  29118525 ttaaaaagaaatatatctatgtagtactaactactacataaaaataataatt 29118474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 55147877 - 55147952
Alignment:
Q  151 aaaaatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||| |||||| |||| | ||||||||||| |||||||||| | ||| | |||| ||||||||||||||||||    
T  55147877 aaaaatagaattaatcaaaacaaattaaaaagaaatatatctatgttgtagtgactattaagtaaaaataataatt 55147952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 38087703 - 38087662
Alignment:
Q  185 atatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  38087703 atatatctatattgtactaactattaagtaaaaataataatt 38087662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 2113914 - 2113842
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| |||| | | ||| ||||| |||||||||| |||||||||||||||  |||| |||||||||    
T  2113914 aatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactacataaagataataatt 2113842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 15986944 - 15986996
Alignment:
Q  174 attaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||| | ||||||||||||||||||||||||||| |||| |||| ||||    
T  15986944 attaaaaataaatatatctatatagtactaactactaattaaagataacaatt 15986996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 6137250 - 6137207
Alignment:
Q  183 atatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||    
T  6137250 atatatatatatatattactaactactaaataaaaataataatt 6137207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 47059744 - 47059693
Alignment:
Q  175 ttaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||| |||||| | |||| ||||||||| ||||||||||||||||||    
T  47059744 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataatt 47059693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 47082058 - 47082109
Alignment:
Q  175 ttaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||| |||||| | |||| ||||||||| ||||||||||||||||||    
T  47082058 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataatt 47082109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 4596531 - 4596585
Alignment:
Q  172 gaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||||| | |||||| |||||| ||||||| ||||| ||||||||||||||    
T  4596531 gaattaaaaacaaatatatatatatattactaacaactaaataaaaataataatt 4596585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 35372195 - 35372229
Alignment:
Q  192 tatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||| ||||||||||||||||||||||||||    
T  35372195 tatatagtcctaactactaagtaaaaataataatt 35372229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 28376725 - 28376660
Alignment:
Q  161 ttaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28376725 ttaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataatt 28376660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 22930396 - 22930324
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  22930396 aatagaattaatcaaagcgaattaaaaagatatatatctatatagtactaactattaagtaaaaattataatt 22930324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 34142099 - 34142030
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataata 223  Q
    |||| |||||| |||| || |||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  34142099 aatagaattaatcaaagcggattaaaaagaaatatatctatatagtactaactactaaataaaaataata 34142030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 13580412 - 13580484
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||| |||| ||||||||||||| |||||| |||||| ||||||||| ||||||||||||||||||    
T  13580412 aatagaattaatcaaagcgaattaaaaagaaatatatttatataatactaactattaagtaaaaataataatt 13580484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 4350722 - 4350797
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatata---tatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| ||||||||||| ||||||||||| | |||   |||||||||| ||||||||||||| ||||||||||||||    
T  4350722 aatagaattaaccaaagcgaattaaaaaaaaataatatatctatataatactaactactaaataaaaataataatt 4350797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 26835667 - 26835720
Alignment:
Q  173 aattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||    
T  26835667 aattaaaaagaaatatatttatattgtactaactattaagtaaaaataataatt 26835720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 13236210 - 13236166
Alignment:
Q  183 atatatatctatatagtactaactactaagta-aaaataataatt 226  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||    
T  13236210 atatatatatatatagtactaactactaagtaaaaaataataatt 13236166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 21348437 - 21348480
Alignment:
Q  183 atatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||| |||||| ||||||||||||||||||||||| ||||    
T  21348437 atatatatatatataatactaactactaagtaaaaataagaatt 21348480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 12181867 - 12181826
Alignment:
Q  185 atatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||||| |||||| |||||||||||||||||||||    
T  12181867 atatttctatataatactaattactaagtaaaaataataatt 12181826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 12426295 - 12426254
Alignment:
Q  185 atatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||||| |||||| |||||||||||||||||||||    
T  12426295 atatttctatataatactaattactaagtaaaaataataatt 12426254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 22486649 - 22486721
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||| |||| | ||||||||||| | |||||||| | ||| | |||||||||||| ||||||||||    
T  22486649 aatagaattaatcaaaacaaattaaaaagaaacatatctattttgtagtgactactaagtaagaataataatt 22486721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 43872522 - 43872482
Alignment:
Q  185 atatatctatatagtactaactactaagtaaaaataataat 225  Q
    |||||||||||| ||| | ||||||||||||||||||||||    
T  43872522 atatatctatattgtattgactactaagtaaaaataataat 43872482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 1240502 - 1240430
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||| |||| || |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  1240502 aatagaattaatcaaagcggattaaaaagaaatatatttatatagtactaactactaagtaaaaataataatt 1240430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 8246774 - 8246846
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||| |||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  8246774 aatagaattaatcaaatcaaattaaaaagaaatatatctatatagtactaactattaagtaaaaataataatt 8246846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 29664261 - 29664194
Alignment:
Q  159 aattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||| |||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||    
T  29664261 aattaatcaaaacgaattaaaaagaaatatacctatatagtactaattactaagtaaaaataataatt 29664194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 33735804 - 33735876
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| |||||| ||||||||||| |||||| |||| | ||||||||||||  ||||| ||||||||    
T  33735804 aatataattaatcaaaccaaattaaaaagaaatatatttatacaatactaactactagataaaattaataatt 33735876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 3265540 - 3265591
Alignment:
Q  175 ttaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||| |||||||||| || ||||||||| ||||||||||||||||||    
T  3265540 ttaaaaagaaatatatctatttaatactaactattaagtaaaaataataatt 3265591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 30717934 - 30717893
Alignment:
Q  185 atatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||||| || ||| |||||||||||||||||||||    
T  30717934 atatatctatataatattaattactaagtaaaaataataatt 30717893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 52805931 - 52805976
Alignment:
Q  172 gaattaaaaagatatatatctatatagtactaactactaagtaaaa 217  Q
    |||||||||| |||||||| |||||| ||||||||||||| |||||    
T  52805931 gaattaaaaatatatatatttatataatactaactactaaataaaa 52805976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 35405412 - 35405368
Alignment:
Q  153 aaatataattaaccaaaccgaattaaaaagatatatatctatata 197  Q
    |||||||||||| |||| ||||||||||||| |||||| ||||||    
T  35405412 aaatataattaatcaaagcgaattaaaaagaaatatatatatata 35405368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 12177883 - 12177813
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatat--ctatatagtactaactactaagtaaaaataat 222  Q
    |||| ||||||  ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  12177883 aataaaattaattaaaccgaattaaaaagatatatatatctatatagtactaactactaagtaaaaataat 12177813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 35812677 - 35812617
Alignment:
Q  166 caaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||    
T  35812677 caaagcgaattaaaaagaaatatatctatatagtactaattattaagtaaaaataataatt 35812617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 26912402 - 26912345
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaa 211  Q
    |||| |||||| |||| ||||||||||||| |||||||||||||||||||||||||||    
T  26912402 aatagaattaatcaaagcgaattaaaaagaaatatatctatatagtactaactactaa 26912345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 22318718 - 22318789
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| ||||| ||||||||| |||| ||||||||||| || |||||||||| ||||||||||||||    
T  22318718 aatataattaatcaaacggaattaaaa-gatacatatctatataatattaactactaaataaaaataataatt 22318789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 26914397 - 26914469
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| |||| ||||||||||  | | |||| |||||| ||||||||||||||||||||||||||||    
T  26914397 aatataattaatcaaaacgaattaaaagtaaacatatgtatataatactaactactaagtaaaaataataatt 26914469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 3940724 - 3940777
Alignment:
Q  173 aattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| ||||||||||||  |||| |||||||||||||||||||||||    
T  3940724 aattaaaaagaaatatatctatattatacttactactaagtaaaaataataatt 3940777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 42336001 - 42336062
Alignment:
Q  156 tataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaa 217  Q
    |||||||||  ||||||||||||||||| ||||||||||||| ||||||||| ||| |||||    
T  42336001 tataattaattaaaccgaattaaaaagaaatatatctatataatactaactattaactaaaa 42336062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 15134537 - 15134577
Alignment:
Q  186 tatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  15134537 tatatatatatagtactagctactaagtaaaaataataatt 15134577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 33480544 - 33480616
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| |||| | | ||| ||||| |||||||||| |||||||||||| ||  ||||||||||||||    
T  33480544 aatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactattacataaaaataataatt 33480616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 21292805 - 21292856
Alignment:
Q  175 ttaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||| |||||| |||||  || |||||||||||||||||||||||||    
T  21292805 ttaaaaagaaatatatttatatgatattaactactaagtaaaaataataatt 21292856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 30095843 - 30095886
Alignment:
Q  183 atatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||| |||||| || |||||||||||||||||||||||||    
T  30095843 atatatatatatatattaataactactaagtaaaaataataatt 30095886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 21129381 - 21129451
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataa 224  Q
    |||| |||||| |||||| ||||||||||| |||||||||| | ||| | |||||||| ||| ||||||||    
T  21129381 aatagaattaatcaaaccaaattaaaaagaaatatatctattttgtagtgactactaaataagaataataa 21129451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 26912533 - 26912495
Alignment:
Q  31 cggtcctaagatttttgatgtcttaggcaaaataataaa 69  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  26912533 cggtcctaagatttttgatgtcttgagcaaaataataaa 26912495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 40351854 - 40351892
Alignment:
Q  186 tatatctatatagtactaactactaagtaaaaataataa 224  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  40351854 tatatctatataatactaactactgagtaaaaataataa 40351892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 49164858 - 49164892
Alignment:
Q  192 tatatagtactaactactaagtaaaaataataatt 226  Q
    |||||| ||||||||||||||||||||||||||||    
T  49164858 tatatactactaactactaagtaaaaataataatt 49164892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 37996545 - 37996512
Alignment:
Q  193 atatagtactaactactaagtaaaaataataatt 226  Q
    |||||||| |||||||||||||||||||||||||    
T  37996545 atatagtattaactactaagtaaaaataataatt 37996512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 31329665 - 31329713
Alignment:
Q  178 aaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||| |||||| |||||| |||||| ||| |||||||||||||||||    
T  31329665 aaaagaaatatatgtatataatactaattacgaagtaaaaataataatt 31329713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 33510156 - 33510223
Alignment:
Q  159 aattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||| |||| ||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  33510156 aattaatcaaaacgaattaaaaagaaatatatctatgtagcactaactactaagtaaaaataataatt 33510223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 15670993 - 15670921
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||| |||| | ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  15670993 aatagaattaatcaaaacaaattaaaaagaaatatatctatattgtaataactactaagtaaaaataataatt 15670921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 33682716 - 33682780
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaa 218  Q
    |||| |||||| ||||  |||||||||||| |||||||||| |||||||||||| ||||||||||    
T  33682716 aatagaattaatcaaagtgaattaaaaagaaatatatctatctagtactaactattaagtaaaaa 33682780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 2758129 - 2758078
Alignment:
Q  175 ttaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||| |||| | |||||||||||||||||||| ||||||||||||||    
T  2758129 ttaaaaagaaatatgtttatatagtactaactactaattaaaaataataatt 2758078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 54417081 - 54417148
Alignment:
Q  159 aattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||| ||||  ||||||||| || || ||||||||||| ||||||||| |||||||||||||||||    
T  54417081 aattaatcaaagtgaattaaaaggaaatgtatctatatagcactaactaccaagtaaaaataataatt 54417148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 42417970 - 42417929
Alignment:
Q  185 atatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  42417970 atatatttatatagtattaactactaagtaaaaataataatt 42417929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 11383637 - 11383594
Alignment:
Q  183 atatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||    
T  11383637 atatatatatatatattactaactactaaataaaaataataatt 11383594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 19149905 - 19149976
Alignment:
Q  155 atataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||||| |||| ||||||||||||| |||||| |||| | || |||||| ||| ||||||||| ||||    
T  19149905 atataattaatcaaagcgaattaaaaagaaatatatttataaattattaactattaaataaaaataaaaatt 19149976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 18257969 - 18258010
Alignment:
Q  183 atatatatctatatagtactaactactaagtaaaaataataa 224  Q
    |||||||| |||||| ||||||||| ||||||||||||||||    
T  18257969 atatatatgtatataatactaactattaagtaaaaataataa 18258010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 27541153 - 27541194
Alignment:
Q  185 atatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||||| |||||| |||||| ||||||||||||||    
T  27541153 atatatctatatattactaattactaaataaaaataataatt 27541194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 52706734 - 52706787
Alignment:
Q  173 aattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| |||||||||||| |||   |||||||| ||||||||||||||    
T  52706734 aattaaaaagaaatatatctatattgtaaagactactaaataaaaataataatt 52706787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 7887264 - 7887313
Alignment:
Q  177 aaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  7887264 aaaaagaaacatatctatatagtactaactactaagtaaaaataataatt 7887313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 16570550 - 16570622
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||| ||||  |||||||||||| |||||||||||| |||| ||||| ||||||||||||||||||    
T  16570550 aatagaattaatcaaagtgaattaaaaagaaatatatctatatggtaccaactaataagtaaaaataataatt 16570622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 32257739 - 32257807
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataat 222  Q
    |||| |||||| |||| | ||||||||| | |||||||||| || ||||||||||||||||||||||||    
T  32257739 aataaaattaatcaaagcaaattaaaaaaaaatatatctatgtaatactaactactaagtaaaaataat 32257807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 502858 - 502808
Alignment:
Q  175 ttaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  502858 ttaaaaagaaatatatctatataatactaact-ctaagtaaaaataataatt 502808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 10325715 - 10325758
Alignment:
Q  183 atatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||||||| |||||||||||||| ||||||||||||||||||||    
T  10325715 atatatatatatatagtactaacaactaagtaaaaataataatt 10325758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 3193576 - 3193648
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||  |||| | | ||||||||| |||||||||| |||||||| ||||||  ||||||||||||||    
T  3193576 aatataattattcaaagcaatttaaaaagaaatatatctatgtagtactacctactacataaaaataataatt 3193648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 3596966 - 3597038
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||| |||| ||||||||||||| |||||||   ||| |||||| |||||| ||||||||||||||    
T  3596966 aatagaattaatcaaaacgaattaaaaagaaatatatcacaataatactaattactaaataaaaataataatt 3597038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 39542461 - 39542413
Alignment:
Q  178 aaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| ||||||||  |||||||||||||||||| |||||||||||||||    
T  39542461 aaaaaatatatattcatatagtactaactactacgtaaaaataataatt 39542413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 12263735 - 12263774
Alignment:
Q  187 atatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  12263735 atatctatatagtactaaccattaagtaaaaataataatt 12263774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 16569375 - 16569426
Alignment:
Q  175 ttaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||| ||||| ||||||| || || ||||||||||||||||||||||    
T  16569375 ttaaaaagaaatatacctatataatattacctactaagtaaaaataataatt 16569426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 20870705 - 20870637
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    |||| |||||| ||||  |||||||||||| ||||||    ||||||||||||||||| ||||||||||||||    
T  20870705 aataaaattaatcaaagggaattaaaaagaaatatat----atagtactaactactaaataaaaataataatt 20870637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 5920 - 5849
Alignment:
Q  154 aatataattaaccaaaccgaattaaaaagatatatatctatatagtactaactactaagtaaaaataataatt 226  Q
    ||||||||||| |||| | | ||| ||||| |||||||||| |||||||||||||| | ||||||||||||||    
T  5920 aatataattaatcaaagcaatttagaaagaaatatatctatgtagtactaactactca-taaaaataataatt 5849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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