View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284_high_7 (Length: 504)
Name: NF5284_high_7
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 44314114 - 44314584
Alignment:
| Q |
18 |
agttattaagaagataaattttatttagaatagataagagaaggcttcagcgttgcttataaactgcgtccgagcttgttacgtatcttactaatataat |
117 |
Q |
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| T |
44314114 |
agttattaagaagataaattttatttagaatagataagagaaggcttcagcgtcgcttataaactgcgtccgagcttgttacgtatcttactaatataat |
44314213 |
T |
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| Q |
118 |
cagaagccaatccatcaacacaaagctctttatttggattaacatcgtgaagtctctctttatggatcaaatactccgttgatcggttgcttccaactga |
217 |
Q |
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| T |
44314214 |
cagaagccaatccatcaacacaaagctctttatttggattaacatcgtgaagtctctctttatggatcaaatactccgttgatcggttgcttccaactga |
44314313 |
T |
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| Q |
218 |
cttgataacatacgtagggtttgcgcggctctgcggctgttgtgaccttctactgcttgctggaaattgcttattagaaaccaatttttccttcataggt |
317 |
Q |
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| T |
44314314 |
cttgataacatacgtagggtttgcgcggctctgcggctgttgtgaccttctactgcttgctggaaattgcttattagaaaccaatttttccttcataggt |
44314413 |
T |
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| Q |
318 |
tccttctcagaataatcagaatctgaaagatccttatccttccttgattttctagtagtagaagctccaactccaagggtcctttgtgcaatagagaaag |
417 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44314414 |
tccttc---------tcagaatctgaaagatccttatccttccttgattttctagtagtagaagctccaactccaagggtcctttgtgcaatagagaaag |
44314504 |
T |
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| Q |
418 |
aggataaccttatgacatttactacaaccttcattgatttctcacaaagagattcctcattcttggactttcctatgcta |
497 |
Q |
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| T |
44314505 |
aggataaccttatgacatttactacaaccttcattgatttctcacaaagagattcctcattcttggactttcctatgcta |
44314584 |
T |
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